Running NetProphet on a Desktop

Let's run NetProphet 2.0 in serial processing mode on your MacOS or Linux desktop using -s flag (for serial). Execute this in command line:

$ cd ${NETPROPHET2_DIR}
$ ./NetProphet2 -s -f <config_file>

Then you will see following messages that monitor the progress:

Unlocking working directory.
Provided cores: 1
Rules claiming more threads will be scaled down.
Job counts:
	count	jobs
	1	all
	1	assemble_final_network
	1	build_motif_network
	1	combine_npwa_bnwa
	1	infer_motifs
	1	make_directories
	1	map_bart_network
	1	map_np_network
	1	prepare_resources
	1	score_motifs
	1	weighted_average_bart_network
	1	weighted_average_np_network
	12
rule make_directories:
	output : ...
1 of 12 steps (8%) done
rule prepare_resources:
...
2 of 12 steps (17%) done
...
...
...
12 of 12 steps (100%) done