Code

Adding sanity check to tutorial#38

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BenMueller1 merged 18 commits intodevBrentLab/yeastdnnexplorer:devfrom adding_sanity_check_to_tutorialBrentLab/yeastdnnexplorer:adding_sanity_check_to_tutorialCopy head branch name to clipboardFeb 29, 2024

+316-20

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Commits on Feb 4, 2024

• Bump codecov/codecov-action from 3 to 4 (#13)

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• Update torch requirement from ^1.0.2 to ^2.2.0 (#12)

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• Bump actions/checkout from 2 to 4 (#2)

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• Bump actions/setup-python from 2 to 5 (#1)

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• Update black requirement from ^23.12.1 to ^24.1.1 (#9)

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• Bump griffe from 0.39.1 to 0.40.0 (#11)

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• Bump mkdocs-material from 9.5.5 to 9.5.7 (#14)

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Commits on Feb 13, 2024

• updating pytest CI to include multiple OS

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• fixing readme badge order; adding codecove badge (#5)

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• removing plural from gene_populations; resolves #6 (#7)

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Commits on Feb 15, 2024

• Merge branch 'dev' of https://github.com/BrentLab/yeastdnnexplorer into dev

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Commits on Feb 21, 2024

• merge with remote

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Commits on Feb 29, 2024

• Merge branch 'dev' of https://github.com/BrentLab/yeastdnnexplorer into dev

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• correcting error in data generation regarding tf indexing

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• adding another cell to the tutorial to show how to use the function that relates binding strength to purturbation effect

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• improved plot for the tf effect on perturbation

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• changing colors for aesthetics

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• changing colors for aesthetics x2

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