Build Hierarchie

The hierarchie management is in the folder:

./i2b2hierarchie

Edit mm file

Run script

python3 DBN_create_hierarchy_2018_04_20.py osiris_v6.mm config_file.txt see3

mm file and output prefix (see3) can be modified

Copy files

1. Copy see3i2b2_mapppings.txt ==> ./osirisDataLoader/mapping_files/i2b2_mapppings.txt
2. Copy see3i2b2_meta.txt ==> ./osirisDataLoader/ressources/ontologyLoader/osirisMetadata/see3i2b2_meta.txt
3. Copy see3i2b2shrine_.txt ==> ./osirisDataLoader/ressources/ontologyLoader/osirisMetadata/see3i2b2shrine_.txt
4. Copy see3AdapterMapping-osiris.csv ==> ./shrine/tomcat/lib/AdapterMapping-osiris.csv

Commit to branch dataLoader

Push to git repo

Follow instruction for application update, metadata update and data loading

https://github.com/CARPEM/SHRINEDocker/wiki/Deploy-etl