add data.diagnostics_iops; rm prepare_run

input/data.diagnostics_iops

@@ -0,0 +1,97 @@
+# Diagnostic Package Choices
+#-----------------
+# for each output-stream:
+#  filename(n) : prefix of the output file name (only 8.c long) for outp.stream n
+#  frequency(n):< 0 : write snap-shot output every multiple of |frequency| (iter)
+#               > 0 : write time-average output every multiple of frequency (iter)
+#  levels(:,n) : list of levels to write to file (Notes: declared as REAL)
+#                 when this entry is missing, select all common levels of this list
+#  fields(:,n) : list of diagnostics fields (8.c) (see "available_diagnostics" file
+#                 for the list of all available diag. in this particular config)
+#--------------------------------------------------------------------
+#
+ &diagnostics_list
+#
+   dumpatlast = .TRUE.,
+   diagMdsDir = 'diags',
+#
+ frequency(1)=  2635200.,
+ filename(1)= 'iop_3d_set1',
+ fields(1:39, 1)='a001    ','a002    ','a003    ','a004    ','a005    ',
+                 'a006    ','a007    ','a008    ','a009    ','a010    ',
+                 'a011    ','a012    ','a013    ',
+                 'bt001   ','bt002   ','bt003   ','bt004   ','bt005   ',
+                 'bt006   ','bt007   ','bt008   ','bt009   ','bt010   ',
+                 'bt011   ','bt012   ','bt013   ',
+                 'bb001   ','bb002   ','bb003   ','bb004   ','bb005   ',
+                 'bb006   ','bb007   ','bb008   ','bb009   ','bb010   ',
+                 'bb011   ','bb012   ','bb013   ',
+#
+ frequency(2)=  2635200.,
+ filename(2)= 'iop_3d_set2',
+ fields(1:39, 2)='aCDOM001','aCDOM002','aCDOM003','aCDOM004','aCDOM005',
+                 'aCDOM006','aCDOM007','aCDOM008','aCDOM009','aCDOM010',
+                 'aCDOM011','aCDOM012','aCDOM013',
+                 'aplk001','aplk002','aplk003','aplk004','aplk005',
+                 'aplk006','aplk007','aplk008','aplk009','aplk010',
+                 'aplk011','aplk012','aplk013',
+                 'bbplk001','bbplk002','bbplk003','bbplk004','bbplk005',
+                 'bbplk006','bbplk007','bbplk008','bbplk009','bbplk010',
+                 'bbplk011','bbplk012','bbplk013',
+#
+ frequency(3)=  2635200.,
+ filename(3)= 'nut_3d_set1',
+ fields(1:22, 3)='gGUD01  ','gGUD02  ','gGUD03  ','gGUD04  ','gGUD05  ','gGUD06  ','gGUD07  ',
+                 'gTr01   ','gTr02   ','gTr03   ','gTr04   ','gTr05   ','gTr06   ','gTr07   ',
+      'C_DIN   ','C_PO4   ','C_Si    ','C_Fe    ','S_DIN   ','S_PO4   ','S_Si    ','S_Fe    ',
+#
+ frequency(4)=  2635200.,
+ filename(4)= 'various_3d_set1',
+ fields(1:5, 4)='GGL90TKE','GGL90Lmx','GGL90Kr ','pH      ','pCO2    ',
+#
+  frequency(5) = 2635200.0,
+   fields(1:25,5) = 'oceQsw  ','SFLUX   ','oceSPflx',
+   filename(5) = 'state_2d_set3',
+#
+  frequency(6) = 2635200.0,
+   fields(1:5,6) = 'EXFwspee','fluxCO2 ','gDICsurf','gALKsurf','gO2surf ',
+   filename(6) = 'various_2d_set1',
+#
+ &
+#
+#
+# Parameter for Diagnostics of per level statistics:
+#-----------------
+# for each output-stream:
+#  stat_fname(n) : prefix of the output file name (only 8.c long) for outp.stream n
+#  stat_freq(n):< 0 : write snap-shot output every |stat_freq| seconds
+#               > 0 : write time-average output every stat_freq seconds
+#  stat_phase(n)    : write at time = stat_phase + multiple of |stat_freq|
+#  stat_region(:,n) : list of "regions" (default: 1 region only=global)
+#  stat_fields(:,n) : list of diagnostics fields (8.c) (see "available_diagnostics.log"
+#                 file for the list of all available diag. in this particular config)
+#-----------------
+ &DIAG_STATIS_PARMS
+# diagSt_regMaskFile='basin_masks_eccollc_90x50.bin',
+# nSetRegMskFile=1,
+# set_regMask(1)= 1,  1,  1,  1,  1,  1,  1,  1,  1,
+#                 1,  1,  1,  1,  1,  1,  1,  1
+# val_regMask(1)= 1., 2., 3., 4., 5., 6., 7., 8., 9.,
+#                10.,11.,12.,13.,14.,15.,16.,17.
+##---
+# stat_fields(1,1)= 'ETAN    ','ETANSQ  ','DETADT2 ',
+#                   'UVEL    ','VVEL    ','WVEL    ',
+#                   'THETA   ','SALT    ',
+#    stat_fname(1)= 'dynStDiag',
+#     stat_freq(1)= 3153600.,
+# stat_region(1,1)=  1, 2, 3, 4, 5, 6, 7, 8, 9,
+#                   10,11,12,13,14,15,16,17
+##---
+# stat_fields(1,2)= 'oceTAUX ','oceTAUY ',
+#                   'surForcT','surForcS','TFLUX   ','SFLUX   ',
+#                   'oceQnet ','oceSflux','oceFWflx',
+#    stat_fname(2)= 'surfStDiag',
+#     stat_freq(2)= 3153600.,
+# stat_region(1,2)=  1, 2, 3, 4, 5, 6, 7, 8, 9,
+#                   10,11,12,13,14,15,16,17
+ &