Refactor & add CreateNetwork rules #14

kelly-sovacool · 2025-01-13T15:54:55Z

Changes

(~~Strikethrough~~ any points that are not applicable.)

This comment contains a description of changes with justifications, with any relevant issues linked.
Update docs if there are any API changes such as a bug fix, new feature, or any change in behavior.
Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

for standardization and correct syntax highlighting

to prevent continuing with the script when part of it fails

to prevent wrong input files from being used

kelly-sovacool added 17 commits June 14, 2024 09:39

refactor: rename tobias.snakefile to Snakefile

875f85d

for standardization and correct syntax highlighting

chore: improve readability with shell indents

1622424

docs: add rulegraph for devs

fed204a

refactor: move Snakefile to canonical name

89bc519

refactor: wildcard as a param is redundant

9b0348d

fix: set OPENBLAS threads

955a622

feat: create network within each condition

daa227e

fix: run in unofficial bash script mode

e4116fd

to prevent continuing with the script when part of it fails

fix: use named inputs in bgzip beds rule

2b12595

to prevent wrong input files from being used

docs: update rulegraph

c7955f2

chore: make all scripts executable

da5c647

refactor: prepare rules for bgzip separately

d5fe76e

test: add small test motifs file

ffe14ff

feat: plot specific motifs instead of all

57281d7

feat: uncomment create network

b68ec04

docs: show fav_motifs example

b442d11

chore: Merge branch 'main' into refactor

d27b4fa

kelly-sovacool self-assigned this Jan 13, 2025