Skip to content

Issues: CCBR/CHAMPAGNE

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

51 Open 116 Closed
51 Open 116 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

all-vs-all JSD score enhancement New feature or request
#212 opened Nov 20, 2024 by kelly-sovacool
1
option to call peaks on pooled replicates enhancement New feature or request
#211 opened Nov 20, 2024 by kelly-sovacool
@kelly-sovacool
document how to run contrasts documentation Improvements or additions to documentation
#209 opened Oct 10, 2024 by kelly-sovacool
check that input is 2.5x read coverage of samples enhancement New feature or request
#205 opened Aug 23, 2024 by kelly-sovacool
refactor: use CCBR/Tools for shared utility functions
#203 opened Aug 14, 2024 by kelly-sovacool
@kelly-sovacool
Replace sicer with epic2 enhancement New feature or request
#199 opened Jul 8, 2024 by kopardev
@kelly-sovacool
add featurecounts for consensus peaks enhancement New feature or request
#194 opened Feb 29, 2024 by slsevilla
R scripts are producing Fontconfig errors related to cache directory bug Something isn't working
#193 opened Feb 26, 2024 by slsevilla
1
consider using 'quick' partition on biowulf for small & fast jobs
#187 opened Feb 23, 2024 by kelly-sovacool
Reduce footprint of pipeline bug Something isn't working
#184 opened Feb 23, 2024 by slsevilla
1 task
1
jaccard index is running significantly more comparisons than needs to be performed bug Something isn't working HighPriority
#182 opened Feb 23, 2024 by slsevilla
can we get champagne run to work without the need for init? cli Related to the Command Line Interface
#178 opened Feb 19, 2024 by kelly-sovacool
3
create workflows/champagne.nf
#177 opened Feb 19, 2024 by kelly-sovacool
clarify input vs control documentation Improvements or additions to documentation
#175 opened Feb 19, 2024 by kelly-sovacool 2024-08
overhaul documentation website documentation Improvements or additions to documentation LowPriority
#174 opened Jan 19, 2024 by kelly-sovacool 2025-01
@kelly-sovacool
1
stub run local & on github actions hangs indefinitely
#171 opened Jan 18, 2024 by kelly-sovacool
@kelly-sovacool
1
chipseeker uses all cores available bug Something isn't working MediumPriority
#169 opened Jan 16, 2024 by kelly-sovacool
@kelly-sovacool
3
Download fastqs from SRA and populate sample sheet enhancement New feature or request
#166 opened Jan 11, 2024 by kelly-sovacool
@kelly-sovacool
Consider using Sierra Platinum for consensus peak calling on biological replicates
#164 opened Jan 3, 2024 by kelly-sovacool
1
shared singularity cache doesn't work for non-CCBR users bug Something isn't working
#161 opened Dec 8, 2023 by kelly-sovacool
@kelly-sovacool
5
q-values after consensus peak normalization are all 1 bug Something isn't working
#160 opened Dec 5, 2023 by kelly-sovacool
2
Consider consensus peak overlap procedure
#159 opened Nov 30, 2023 by kelly-sovacool
2
Add ROSE enhancement New feature or request
#149 opened Nov 15, 2023 by kopardev
@kelly-sovacool
Spike-in Normalization support enhancement New feature or request
#148 opened Nov 15, 2023 by kopardev
@kelly-sovacool
2
docs: create flowchart with LucidChart documentation Improvements or additions to documentation
#131 opened Nov 3, 2023 by kelly-sovacool 2024-08
@kelly-sovacool
ProTip! Find all open issues with in progress development work with linked:pr.