Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fix effective genome fraction #119

Closed
kelly-sovacool opened this issue Oct 16, 2023 · 0 comments · Fixed by #112
Closed

Fix effective genome fraction #119

kelly-sovacool opened this issue Oct 16, 2023 · 0 comments · Fixed by #112
Assignees
@kelly-sovacool
Labels
bug Something isn't working
Milestone
2023w42_1020

Comments

@kelly-sovacool
Copy link
Member

https://github.com/CCBR/Pipeliner/blob/86c6ccaa3d58381a0ffd696bbf9c047e4f991f9e/Rules/ChIPseq.snakefile#L69-L82

just divide effective size by length of all chromosomes in sizes file. exclude those containing _, but don't exclude M/X/Y.
@kelly-sovacool kelly-sovacool self-assigned this Oct 16, 2023
@kelly-sovacool kelly-sovacool added the bug Something isn't working label Oct 16, 2023
@kelly-sovacool kelly-sovacool added this to the 2023w42_1020 milestone Oct 17, 2023
@kelly-sovacool kelly-sovacool mentioned this issue Oct 19, 2023
Merged
3 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@kelly-sovacool kelly-sovacool

Labels
bug Something isn't working
Projects
None yet
Milestone
2023w42_1020
Development

Successfully merging a pull request may close this issue.

Prepare release v0.2.0 CCBR/CHAMPAGNE
1 participant
@kelly-sovacool