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change default publish_dir_mode to hardlink #188

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kelly-sovacool opened this issue Feb 23, 2024 · 2 comments
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change default publish_dir_mode to hardlink #188

kelly-sovacool opened this issue Feb 23, 2024 · 2 comments
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wontfix This will not be worked on
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2024-07

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CHAMPAGNE/nextflow.config

Line 19 in d06ce0f

publish_dir_mode = 'symlink'

at least on biowulf
@kelly-sovacool kelly-sovacool mentioned this issue Feb 23, 2024
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ensures results/output files will still exist even if workdir gets deleted

@kelly-sovacool kelly-sovacool added this to the 2024-07 milestone Jul 8, 2024
@kelly-sovacool kelly-sovacool self-assigned this Jul 8, 2024
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actually may need to leave it as a symlink or copy, because hard links won't work when the workdir and projectdir are in different locations.

@kelly-sovacool kelly-sovacool added the wontfix This will not be worked on label Jul 12, 2024
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