feat: build docker and push to hub

CCBR · Oct 25, 2023 · eaa643e · eaa643e
1 parent 171d5f4
commit eaa643e
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Showing 2 changed files with 7 additions and 2 deletions.
diff --git a/docker/logan_base/Dockerfile b/docker/logan_base/Dockerfile
@@ -135,7 +135,7 @@ ENV SNPEFF_JAR="/opt2/snpEff/snpEff.jar"
 RUN git clone https://github.com/GregoryFaust/samblaster.git \
     && cd /opt2/samblaster \
     && make \
-    && chmod a+rX /opt2/samblaster/samblaster
+    && chmod a+rx /opt2/samblaster/samblaster
 ENV PATH="/opt2/samblaster:$PATH"
 WORKDIR /opt2
 
@@ -188,7 +188,8 @@ ENV PATH="/opt2/hmftools:$PATH"
 # SvABA
 RUN wget -O svaba_1.2.0 https://github.com/walaj/svaba/releases/download/v1.2.0/svaba \
     && mkdir svaba \ 
-    && mv svaba_1.2.0 svaba/svaba
+    && mv svaba_1.2.0 svaba/svaba \
+    && chmod a+rx /opt2/svaba/svaba
 ENV PATH="/opt2/svaba:$PATH"
 
 

diff --git a/docker/logan_base/meta.yml b/docker/logan_base/meta.yml
@@ -0,0 +1,4 @@
+dockerhub_namespace: dnousome
+image_name: ccbr_logan_base
+version: 0.3.1
+container: "$(dockerhub_namespace)/$(image_name):$(version)"