fix: allow normal to be used more than 1

CCBR · May 7, 2024 · fe3d57f · fe3d57f
2 parents 2a6c2d5 + d06f6f3
commit fe3d57f
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/subworkflows/local/workflows.nf b/subworkflows/local/workflows.nf
@@ -351,7 +351,6 @@ workflow VC {
 
     //Octopus TN
     if ("octopus" in params.callist){
-        bambyinterval
         octopus_in=octopus_tn(bambyinterval) | bcftools_index_octopus
             | groupTuple()
             | map{samplename,vcf,vcfindex-> tuple(samplename,vcf.toSorted{it->(it.name =~ /${samplename}_(.*).octopus.vcf.gz/)[0][1].toInteger()},vcfindex,"octopus")}