- Added additional SV callers(GRIDSS) and annotation for SV (GRIPSS) + CNV Callers (ASCAT, CNVKit) + SNV (#66Deepsomatic)
- Adds ffpe filtering #67
- Bugfixes for hg19 by fixing references
- Updated PON for hg38 using TCGA/GDC references #59
- In development: adding exome support by using bed file to restrict calling regions
- Refactored modules to be similar to nf-core
- Fix error in varscan #71
- Created separate docker #63