chore: delete miniconda container (#168)

* chore: delete miniconda container

no longer used

* chore: update CHANGELOG.md

CHANGELOG.md

@@ -1,6 +1,7 @@
 ## RENEE development version
 
 - Consolidate `build_cluster.json` into `cluster.json`. (#167, @kelly-sovacool)
+- Remove unused miniconda container. (#168, @kelly-sovacool)
 
 ## RENEE 2.6.1
 

config/containers/images.json

@@ -9,7 +9,6 @@
         "fastqc": "docker://nciccbr/ccbr_fastqc_0.11.9:v1.1",
         "fastqvalidator": "docker://nciccbr/ccbr_fastqvalidator:v0.1.0",
         "kraken": "docker://nciccbr/ccbr_kraken_v2.1.1:v0.0.1",
-        "miniconda": "docker://continuumio/miniconda3:4.9.2",
         "multiqc": "docker://skchronicles/multiqc:v0.1.0",
         "picard": "docker://nciccbr/ccbr_picard:v0.0.1",
         "preseq": "docker://nciccbr/ccbr_preseq:v0.0.1",

workflow/rules/common.smk

@@ -4,11 +4,6 @@ from scripts.common import (
     allocated
 )
 
-# This container defines the underlying OS for each job when using the workflow
-# with --use-conda --use-singularity
-container: config['images']['miniconda']
-
-
 # Rules common to RNA-seq pipeline, irrespective if the data is single-end or paired-end
 rule fc_lane:
     """