Add marmoset genome and add rule to reformat GTFs missing attributes

[kelly-sovacool]

Changes

• new rule reformat_gtf in renee build to reformat GTFs that are missing gene_biotype / gene_type attributes in exons.
• new version of the build_rnaseq container with a newer Python version (fix: upgrade build_rnaseq docker for newer Python version Dockers#41)
• add config file for marmoset genome: mCalJac1_2021

Build command:

module load ccbrpipeliner/7
/data/CCBR_Pipeliner/Pipelines/RENEE/renee-dev-sovacool/bin/renee build \
    --sif-cache /data/CCBR_Pipeliner/SIFs \
    --ref-fa /data/CCBR_Pipeliner/db/PipeDB/Indices/mCalJa/GCF_011100555.1_mCalJa1.2.pat.X_genomic.fna \
    --ref-gtf /data/CCBR_Pipeliner/db/PipeDB/Indices/mCalJa/GCF_011100555.1_mCalJa1.2.pat.X_genomic.gtf \
    --ref-name mCalJac1 \
    --gtf-ver 2021 \
    --output /data/CCBR_Pipeliner/db/PipeDB/Indices/mCalJac1_2021

Issues

resolves #177

PR Checklist

(Strikethrough any points that are not applicable.)

• This comment contains a description of changes with justifications, with any relevant issues linked.
• Update docs if there are any API changes.
• Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/