Merge pull request #9 from CCBR/module-versions

fix: use our custom snakemake & python versions
CCBR · Feb 22, 2024 · e22c567 · e22c567
2 parents 9f86f43 + a5c64f2
commit e22c567
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 14 deletions.
diff --git a/.github/workflows/auto_add_reponame_labels.yaml b/.github/workflows/auto_add_reponame_labels.yaml
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,6 +1,7 @@
 ## TRANQUIL development version
 
 - Redirect the website to the README. (#8, @kelly-sovacool)
+- Use our custom installation of Python and Snakemake when running the pipeline with SLURM on FRCE. (#9, @kelly-sovacool)
 
 ## TRANQUIL 0.2.0
 

diff --git a/tranquil b/tranquil
@@ -470,8 +470,8 @@ EOF
 elif [ "$HOST" == "FRCE" ];then
 
 cat >> ${WORKDIR}/submit_script.sbatch << EOF
-module load singularity
-module load snakemake
+export PATH=/mnt/projects/CCBR-Pipelines/bin/:${PATH}
+module load singularity/3.10.5
 EOF
 
 fi