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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
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+77ab81cd
diff --git a/CHANGELOG.html b/CHANGELOG.html
@@ -4522,6 +4522,7 @@ <h3 class="anchored" data-anchor-id="new-modules">New modules</h3>
 <li>also runs samtools sort &amp; outputs index in bai format. (#12)</li>
 </ul></li>
 <li>custom/bam2fastq (#14,#22)</li>
+<li>custom/convertsicer (#36)</li>
 <li>custom/countfastq (#32)</li>
 <li>cutadapt (#11)</li>
 <li>khmer/uniquekmers (#7)</li>

diff --git a/docs/modules.html b/docs/modules.html
@@ -4907,7 +4907,7 @@ <h1 class="title">modules</h1>
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
 
-    <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-listing-category category-default"><div class="category" data-category>All <span class="quarto-category-count">(10)</span></div><div class="category" data-category="adapter trimming">adapter trimming <span class="quarto-category-count">(1)</span></div><div class="category" data-category="adapters">adapters <span class="quarto-category-count">(1)</span></div><div class="category" data-category="alignment">alignment <span class="quarto-category-count">(1)</span></div><div class="category" data-category="bam">bam <span class="quarto-category-count">(5)</span></div><div class="category" data-category="bam2fq">bam2fq <span class="quarto-category-count">(1)</span></div><div class="category" data-category="biopython">biopython <span class="quarto-category-count">(1)</span></div><div class="category" data-category="bwa">bwa <span class="quarto-category-count">(1)</span></div><div class="category" data-category="counts">counts <span class="quarto-category-count">(1)</span></div><div class="category" data-category="cram">cram <span class="quarto-category-count">(2)</span></div><div class="category" data-category="effective genome size">effective genome size <span class="quarto-category-count">(1)</span></div><div class="category" data-category="fasta">fasta <span class="quarto-category-count">(1)</span></div><div class="category" data-category="fastq">fastq <span class="quarto-category-count">(4)</span></div><div class="category" data-category="filter">filter <span class="quarto-category-count">(1)</span></div><div class="category" data-category="genome">genome <span class="quarto-category-count">(1)</span></div><div class="category" data-category="index">index <span class="quarto-category-count">(1)</span></div><div class="category" data-category="k-mer">k-mer <span class="quarto-category-count">(1)</span></div><div class="category" data-category="khmer">khmer <span class="quarto-category-count">(1)</span></div><div class="category" data-category="map">map <span class="quarto-category-count">(1)</span></div><div class="category" data-category="mapping">mapping <span class="quarto-category-count">(1)</span></div><div class="category" data-category="mem">mem <span class="quarto-category-count">(1)</span></div><div class="category" data-category="picard">picard <span class="quarto-category-count">(1)</span></div><div class="category" data-category="python">python <span class="quarto-category-count">(1)</span></div><div class="category" data-category="quality trimming">quality trimming <span class="quarto-category-count">(1)</span></div><div class="category" data-category="reference">reference <span class="quarto-category-count">(1)</span></div><div class="category" data-category="sam">sam <span class="quarto-category-count">(4)</span></div><div class="category" data-category="samtools">samtools <span class="quarto-category-count">(2)</span></div><div class="category" data-category="sort">sort <span class="quarto-category-count">(1)</span></div><div class="category" data-category="stats">stats <span class="quarto-category-count">(1)</span></div><div class="category" data-category="trimming">trimming <span class="quarto-category-count">(1)</span></div></div></div>
+    <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-listing-category category-default"><div class="category" data-category>All <span class="quarto-category-count">(11)</span></div><div class="category" data-category="adapter trimming">adapter trimming <span class="quarto-category-count">(1)</span></div><div class="category" data-category="adapters">adapters <span class="quarto-category-count">(1)</span></div><div class="category" data-category="alignment">alignment <span class="quarto-category-count">(1)</span></div><div class="category" data-category="bam">bam <span class="quarto-category-count">(5)</span></div><div class="category" data-category="bam2fq">bam2fq <span class="quarto-category-count">(1)</span></div><div class="category" data-category="bed">bed <span class="quarto-category-count">(1)</span></div><div class="category" data-category="biopython">biopython <span class="quarto-category-count">(1)</span></div><div class="category" data-category="broadPeak">broadPeak <span class="quarto-category-count">(1)</span></div><div class="category" data-category="bwa">bwa <span class="quarto-category-count">(1)</span></div><div class="category" data-category="chipseq">chipseq <span class="quarto-category-count">(1)</span></div><div class="category" data-category="counts">counts <span class="quarto-category-count">(1)</span></div><div class="category" data-category="cram">cram <span class="quarto-category-count">(2)</span></div><div class="category" data-category="effective genome size">effective genome size <span class="quarto-category-count">(1)</span></div><div class="category" data-category="fasta">fasta <span class="quarto-category-count">(1)</span></div><div class="category" data-category="fastq">fastq <span class="quarto-category-count">(4)</span></div><div class="category" data-category="filter">filter <span class="quarto-category-count">(1)</span></div><div class="category" data-category="genome">genome <span class="quarto-category-count">(1)</span></div><div class="category" data-category="index">index <span class="quarto-category-count">(1)</span></div><div class="category" data-category="k-mer">k-mer <span class="quarto-category-count">(1)</span></div><div class="category" data-category="khmer">khmer <span class="quarto-category-count">(1)</span></div><div class="category" data-category="map">map <span class="quarto-category-count">(1)</span></div><div class="category" data-category="mapping">mapping <span class="quarto-category-count">(1)</span></div><div class="category" data-category="mem">mem <span class="quarto-category-count">(1)</span></div><div class="category" data-category="peaks">peaks <span class="quarto-category-count">(1)</span></div><div class="category" data-category="picard">picard <span class="quarto-category-count">(1)</span></div><div class="category" data-category="python">python <span class="quarto-category-count">(1)</span></div><div class="category" data-category="quality trimming">quality trimming <span class="quarto-category-count">(1)</span></div><div class="category" data-category="reference">reference <span class="quarto-category-count">(1)</span></div><div class="category" data-category="sam">sam <span class="quarto-category-count">(4)</span></div><div class="category" data-category="samtools">samtools <span class="quarto-category-count">(2)</span></div><div class="category" data-category="sicer">sicer <span class="quarto-category-count">(1)</span></div><div class="category" data-category="sort">sort <span class="quarto-category-count">(1)</span></div><div class="category" data-category="stats">stats <span class="quarto-category-count">(1)</span></div><div class="category" data-category="trimming">trimming <span class="quarto-category-count">(1)</span></div></div></div>
 <!-- main -->
 <main class="content quarto-banner-title-block column-page-left" id="quarto-document-content">
 
@@ -4926,7 +4926,7 @@ <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-list
     </div>
 </div>
 <div class="list grid quarto-listing-cols-3">
-<div class="g-col-1" data-index="0" data-categories="index,fasta,genome,reference" data-listing-file-modified-sort="1700230074771" data-listing-reading-time-sort="3">
+<div class="g-col-1" data-index="0" data-categories="index,fasta,genome,reference" data-listing-file-modified-sort="1700662557581" data-listing-reading-time-sort="3">
 <a href="../docs/modules/bwa_index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -4954,7 +4954,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
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+<div class="g-col-1" data-index="1" data-categories="mem,bwa,alignment,map,fastq,bam,sam" data-listing-file-modified-sort="1700662557573" data-listing-reading-time-sort="3">
 <a href="../docs/modules/bwa_mem.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -4991,7 +4991,38 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="2" data-categories="bam2fq,samtools,fastq,picard" data-listing-file-modified-sort="1700230074803" data-listing-reading-time-sort="3">
+<div class="g-col-1" data-index="2" data-categories="sicer,peaks,chipseq,bed,broadPeak" data-listing-file-modified-sort="1700662557561" data-listing-reading-time-sort="3">
+<a href="../docs/modules/convert_sicer.html" class="quarto-grid-link">
+<div class="quarto-grid-item card h-100 card-left">
+<div class="card-body post-contents">
+<h5 class="no-anchor card-title listing-title">
+convert_sicer
+</h5>
+<div class="card-subtitle listing-subtitle">
+<p>Convert SICER output to BED and broadPeak format</p>
+</div>
+<div class="listing-categories">
+<div class="listing-category" onclick="window.quartoListingCategory(&#39;sicer&#39;); return false;">
+sicer
+</div>
+<div class="listing-category" onclick="window.quartoListingCategory(&#39;peaks&#39;); return false;">
+peaks
+</div>
+<div class="listing-category" onclick="window.quartoListingCategory(&#39;chipseq&#39;); return false;">
+chipseq
+</div>
+<div class="listing-category" onclick="window.quartoListingCategory(&#39;bed&#39;); return false;">
+bed
+</div>
+<div class="listing-category" onclick="window.quartoListingCategory(&#39;broadPeak&#39;); return false;">
+broadPeak
+</div>
+</div>
+</div>
+</div>
+</a>
+</div>
+<div class="g-col-1" data-index="3" data-categories="bam2fq,samtools,fastq,picard" data-listing-file-modified-sort="1700662557553" data-listing-reading-time-sort="3">
 <a href="../docs/modules/custom_bam2fastq.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -5019,7 +5050,7 @@ <h5 class="no-anchor card-title listing-title">
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-<div class="g-col-1" data-index="3" data-categories="fastq,biopython,python" data-listing-file-modified-sort="1700230074791" data-listing-reading-time-sort="3">
+<div class="g-col-1" data-index="4" data-categories="fastq,biopython,python" data-listing-file-modified-sort="1700662557541" data-listing-reading-time-sort="3">
 <a href="../docs/modules/custom_countfastq.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -5044,7 +5075,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
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-<div class="g-col-1" data-index="4" data-categories="trimming,adapter trimming,adapters,quality trimming" data-listing-file-modified-sort="1700230074823" data-listing-reading-time-sort="3">
+<div class="g-col-1" data-index="5" data-categories="trimming,adapter trimming,adapters,quality trimming" data-listing-file-modified-sort="1700662557669" data-listing-reading-time-sort="3">
 <a href="../docs/modules/cutadapt.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -5072,7 +5103,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="5" data-categories="khmer,k-mer,effective genome size" data-listing-file-modified-sort="1700230074863" data-listing-reading-time-sort="3">
+<div class="g-col-1" data-index="6" data-categories="khmer,k-mer,effective genome size" data-listing-file-modified-sort="1700662557601" data-listing-reading-time-sort="3">
 <a href="../docs/modules/khmer_uniquekmers.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -5097,7 +5128,7 @@ <h5 class="no-anchor card-title listing-title">
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-<div class="g-col-1" data-index="6" data-categories="fastq,bam,sam" data-listing-file-modified-sort="1700230074815" data-listing-reading-time-sort="3">
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 <a href="../docs/modules/picard_samtofastq.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -5122,7 +5153,7 @@ <h5 class="no-anchor card-title listing-title">
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-<div class="g-col-1" data-index="7" data-categories="bam,filter,samtools" data-listing-file-modified-sort="1700230074855" data-listing-reading-time-sort="3">
+<div class="g-col-1" data-index="8" data-categories="bam,filter,samtools" data-listing-file-modified-sort="1700662557637" data-listing-reading-time-sort="3">
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@@ -5147,7 +5178,7 @@ <h5 class="no-anchor card-title listing-title">
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+<div class="g-col-1" data-index="9" data-categories="stats,mapping,counts,bam,sam,cram" data-listing-file-modified-sort="1700662557621" data-listing-reading-time-sort="3">
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 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -5181,7 +5212,7 @@ <h5 class="no-anchor card-title listing-title">
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-<div class="g-col-1" data-index="9" data-categories="sort,bam,sam,cram" data-listing-file-modified-sort="1700230074835" data-listing-reading-time-sort="3">
+<div class="g-col-1" data-index="10" data-categories="sort,bam,sam,cram" data-listing-file-modified-sort="1700662557657" data-listing-reading-time-sort="3">
 <a href="../docs/modules/samtools_sort.html" class="quarto-grid-link">
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 <div class="card-body post-contents">