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CCBR · Dec 30, 2024 · dc9f6a9 · dc9f6a9
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diff --git a/.github/CONTRIBUTING.html b/.github/CONTRIBUTING.html
@@ -64,6 +64,8 @@
 <script src="../site_libs/quarto-search/fuse.min.js"></script>
 <script src="../site_libs/quarto-search/quarto-search.js"></script>
 <meta name="quarto:offset" content="../">
+<link href="../docs/contributors.html" rel="next">
+<link href="../docs/cite.html" rel="prev">
 <script src="../site_libs/quarto-html/quarto.js"></script>
 <script src="../site_libs/quarto-html/popper.min.js"></script>
 <script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
@@ -105,53 +107,66 @@
 
 </head>
 
-<body class="nav-fixed">
+<body class="nav-sidebar floating nav-fixed">
 
 <div id="quarto-search-results"></div>
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/subworkflows.html"> 
-<span class="menu-text">subworkflows</span></a>
-  </li>  
-</ul>
-            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item dropdown ">
-    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-bi-list" role="link" data-bs-toggle="dropdown" aria-expanded="false">
-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
@@ -164,10 +179,74 @@
 </div>
       </div> <!-- /container-fluid -->
     </nav>
+  <nav class="quarto-secondary-nav">
+    <div class="container-fluid d-flex">
+      <button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+        <i class="bi bi-layout-text-sidebar-reverse"></i>
+      </button>
+        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="../.github/CONTRIBUTING.html">Contributing</a></li></ol></nav>
+        <a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">      
+        </a>
+    </div>
+  </nav>
 </header>
 <!-- content -->
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
 <!-- sidebar -->
+  <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
+    <div class="sidebar-menu-container"> 
+    <ul class="list-unstyled mt-1">
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">home</span></a>
+  </div>
+</li>
+        <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
+ <span class="menu-text">project info</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/cite.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Citation</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../.github/CONTRIBUTING.html" class="sidebar-item-text sidebar-link active">
+ <span class="menu-text">Contributing</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/contributors.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributors</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../LICENSE.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">License</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../CHANGELOG.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Changelog</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+    </ul>
+    </div>
+</nav>
+<div id="quarto-sidebar-glass" class="quarto-sidebar-collapse-item" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item"></div>
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
         <nav id="TOC" role="doc-toc" class="toc-active">
@@ -185,7 +264,7 @@ <h2 id="toc-title">On this page</h2>
 <div class="toc-actions"><ul><li><a href="https://github.com/CCBR/nf-modules/edit/main/.github/CONTRIBUTING.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/nf-modules/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></nav>
     </div>
 <!-- main -->
-<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"></header>
+<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="../.github/CONTRIBUTING.html">Contributing</a></li></ol></nav></header>
 
 
 
@@ -788,6 +867,18 @@ <h2 class="anchored" data-anchor-id="vs-code-extensions">VS code extensions</h2>
   }
 });
 </script>
+<nav class="page-navigation">
+  <div class="nav-page nav-page-previous">
+      <a href="../docs/cite.html" class="pagination-link" aria-label="Citation">
+        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text">Citation</span>
+      </a>          
+  </div>
+  <div class="nav-page nav-page-next">
+      <a href="../docs/contributors.html" class="pagination-link" aria-label="Contributors">
+        <span class="nav-page-text">Contributors</span> <i class="bi bi-arrow-right-short"></i>
+      </a>
+  </div>
+</nav>
 </div> <!-- /content -->
 <footer class="footer">
   <div class="nav-footer">

diff --git a/.github/index.html b/.github/index.html
@@ -77,47 +77,60 @@
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/subworkflows.html"> 
-<span class="menu-text">subworkflows</span></a>
-  </li>  
-</ul>
-            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item dropdown ">
-    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-bi-list" role="link" data-bs-toggle="dropdown" aria-expanded="false">
-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 

diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-08aab74c
+c0c7c5c9