Refactor Entropy Calculations with Averaging Over Timesteps, Robust State Handling, and Enhanced Eigenvalue Filtering#130

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harryswift01 merged 18 commits intomainfrom

127-add-averaging-over-timesteps

Aug 15, 2025

Commits on Aug 8, 2025

Implement running average for force/torque covariance matrices:
harryswift01
committed

Commits on Aug 11, 2025

Refactor matrix averaging logic for modularity:
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refactor: warn on negative eigenvalues instead of halting with error
harryswift01
committed

Commits on Aug 12, 2025

Filter out the negative eigenvalues in the frequencies calculations and set them to 0
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Commits on Aug 14, 2025

Commits on Aug 15, 2025