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Object-oriented programming Refactor for CodeEntropy #88
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a95c09f
Initial implementation of class-based OOP architecture for CodeEntropy:
harryswift01 97e44c2
Fix unit tests to reflect changes with the OOP structure:
harryswift01 8fdf757
Moving `GAS_CONST` to the base class of EntropyManager to avoid repea…
harryswift01 3b90917
refactor: split `execute()` into helper functions and add docstrings:
harryswift01 227effd
Additional test cases for `arg_config_manager.py`:
harryswift01 efc42a0
Additional test cases for `data_logger.py`:
harryswift01 cf602df
rename `test_EntropyFunctions` folder to `test_CodeEntropy` to mainta…
harryswift01 9b82b9b
Additional test cases for `main.py`:
harryswift01 820359f
Fix off-by-one error in trajectory slicing logic (from main commit 98…
harryswift01 5f33309
Pulled in changes to `arg_config_manager.py` from commit bdb09c7 (PR …
harryswift01 be99e00
Merge branch 'main' of https://github.com/CCPBioSim/CodeEntropy into …
harryswift01 155d68b
Additional test cases for `logging_config.py`:
harryswift01 f162f55
Additional test cases for `run.py`:
harryswift01 5c7422e
small edits to the docstrings of `results_df` and `residue_results_df…
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