Avoid None encountered in jnp array warning

[sbidari]

Add condition for padding observed_infection in rtinfectionsrenewalmodel.py to avoid padding the observed_infection when the infection_obs_process_rv is None and prevent the None encountered warning.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 92.73%. Comparing base (fb8a8a4) to head (31d2121).
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #270   +/-   ##
=======================================
  Coverage   92.73%   92.73%           
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  Files          40       40           
  Lines         908      909    +1     
=======================================
+ Hits          842      843    +1     
  Misses         66       66           

Flag	Coverage Δ
unittests	92.73% <100.00%> (+<0.01%)	⬆️

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[damonbayer]

Thanks for figuring this out @sbidari! I think we can remove the the plot.show() lines you added, though.

[sbidari]

I think we either need plot.show() or a semi-colon on the end of the code on the cells with plots. Quarto didn't like it when there were multiple outputs from a single code cell (at least while rendering the docs locally on my computer)

edit: I realize that the addition of plot.show() is totally unrelated to the issue in this PR and probably would have been better as it's own PR. I noticed the images were not rendering properly while I was working on this and fixed it.

[damonbayer]

edit: I realize that the addition of plot.show() is totally unrelated to the issue in this PR and probably would have been better as it's own PR. I noticed the images were not rendering properly while I was working on this and fixed it.

Interesting. Please create new issue and/or PR to describe and fix this problem.