New Link API Endpoint

[cbrinson-rise8]

Description

Create a new API endpoint, /link, that behaves similar to the existing /link-record endpoint. The difference is that it will accept a raw PII payload rather than a FHIR bundle.

Related Issues

closes #5

Additional Notes

Overview of changes

• Adds a new endpoint /link
• Adds tests for new endpoint
• updates src.recordlinker.linking.link.link_record_against_mpi function to accept a schemas.PIIRecord instead of a FHIR bundle.
• src.recordlinker.linking.link.link_record_against_mpi now returns a patient_reference_id in addition to the other values in the returned tuple
• Adds patient_reference_id column to patient mpi table
• Renames internal_id column to person_reference_id in the person mpi table

<--------------------- REMOVE THE LINES BELOW BEFORE MERGING --------------------->

Checklist

Please review and complete the following checklist before submitting your pull request:

• I have ensured that the pull request is of a manageable size, allowing it to be reviewed within a single session.
• I have reviewed my changes to ensure they are clear, concise, and well-documented.
• I have updated the documentation, if applicable.
• I have added or updated test cases to cover my changes, if applicable.
• I have minimized the number of reviewers to include only those essential for the review.
• I have notified teammates in the review thread to build awareness.

Checklist for Reviewers

Please review and complete the following checklist during the review process:

• The code follows best practices and conventions.
• The changes implement the desired functionality or fix the reported issue.
• The tests cover the new changes and pass successfully.
• Any potential edge cases or error scenarios have been considered.

[codecov]

Codecov Report

Attention: Patch coverage is 90.90909% with 3 lines in your changes missing coverage. Please review.

Project coverage is 92.61%. Comparing base (cbe8c78) to head (6116cff).
Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
src/recordlinker/main.py	88.88%	3 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #79      +/-   ##
==========================================
- Coverage   92.75%   92.61%   -0.15%     
==========================================
  Files          17       17              
  Lines         759      785      +26     
==========================================
+ Hits          704      727      +23     
- Misses         55       58       +3     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[ericbuckley]

nice work, that was easier than I thought it be!