Test validation Container #922
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test validation Container | |
| on: | |
| pull_request: | |
| branches: | |
| - "**" | |
| paths: | |
| - containers/validation/** | |
| - containers/fhir-converter/** | |
| merge_group: | |
| types: | |
| - checks_requested | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - pyproject.toml | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| TEST_RUNNER_PYTHON_VERSION: 3.11 | |
| CONTAINER: validation | |
| jobs: | |
| python-linting: | |
| uses: ./.github/workflows/linting-python.yaml | |
| with: | |
| python_runner_version: 3.11 # must be hardcoded; cannot pass in from env | |
| unit-test-python-containers: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| cache: pip | |
| - name: Install pytest and pytest-cov | |
| run: pip install pytest pytest-cov | |
| - name: Install dependencies | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| run: | | |
| commit_hash=$(git rev-parse HEAD) | |
| find ./ -name requirements.txt -exec sed -i -e "s/phdi@main/phdi@${commit_hash}/g" {} \; | |
| pip install -r requirements.txt | |
| if [ -f dev-requirements.txt ]; then | |
| pip install -r dev-requirements.txt | |
| fi | |
| - name: Run unit tests for container with coverage | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| run: | | |
| python -m pytest --cov-report xml --cov=. -m "not integration" tests/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| flags: ${{ env.CONTAINER }} | |
| integration-test-python-containers: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| cache: pip | |
| - name: Install pytest | |
| run: pip install pytest | |
| - name: Install dependencies | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| # When running as a PR check, instead of importing the SDK from @main, | |
| # import it from the current commit. (Need to do this for all containers) | |
| run: | | |
| if [[ $GITHUB_REF != "refs/heads/main" ]]; then | |
| commit_hash=$(git rev-parse HEAD) | |
| find ./ -name requirements.txt -exec sed -i -e "s/phdi@main/phdi@${commit_hash}/g" {} \; | |
| fi | |
| pip install -r requirements.txt | |
| if [ -f dev-requirements.txt ]; then | |
| pip install -r dev-requirements.txt | |
| fi | |
| - name: Install Docker Compose | |
| run: | | |
| sudo curl -L "https://github.com/docker/compose/releases/download/1.29.2/docker-compose-$(uname -s)-$(uname -m)" -o /usr/local/bin/docker-compose | |
| sudo chmod +x /usr/local/bin/docker-compose | |
| - name: Run integration tests for containers | |
| working-directory: ./containers/${{env.CONTAINER}}/tests/integration | |
| run: | | |
| python -m pytest -m "integration" | |
| build-container: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Build ${{ env.CONTAINER }} Container | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: ./containers/${{ env.CONTAINER }} | |
| push: false | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max |