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Validate if sample_name is present in the metadata file #274

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Description

Validate if sample_name is present in the metadata file

Checklist

Go Through Checklist Below and Place A ✔️ (X Inside the Box) if Completed

General Checks

  • Have you run appropriate tests (unit/integration/end-to-end) to check logic across run environments (Conda/Docker/Singularity on Scicomp/AWS/NF Tower/Local)?

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When testing this PR, please do the following:

  • Create two metadata files (1 with sample_name column removed, 1 with a value for sample_name missing)
  • Run the pipeline using the test command and modified metadata files (e.g. nextflow run main.nf -profile test,conda --species rsv --submission --annotation --sra --biosample --submission_config ./conf/submission_config.yaml --meta_path /assets/sample_metadata/rsv_test_metadata_missing_sample_name.xlsx

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[Internal] [Bug] Metadata validation needs to check if a sample_name is provided
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