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Version 1.5.1 patch release #114

Merged
merged 5 commits into from
Apr 22, 2021
Merged

Version 1.5.1 patch release #114

merged 5 commits into from
Apr 22, 2021

Conversation

…#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>
@sfarrens sfarrens added the release New package release PR label Apr 14, 2021
@sfarrens sfarrens self-assigned this Apr 14, 2021
chaithyagr and others added 2 commits April 16, 2021 11:40
* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
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codecov-commenter commented Apr 20, 2021

Codecov Report

Merging #114 (063a611) into master (616c9e7) will increase coverage by 2.64%.
The diff coverage is 65.67%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #114      +/-   ##
==========================================
+ Coverage   90.13%   92.78%   +2.64%     
==========================================
  Files          31       31              
  Lines        2150     2176      +26     
==========================================
+ Hits         1938     2019      +81     
+ Misses        212      157      -55     
Flag Coverage Δ
unittests 92.78% <65.67%> (+2.64%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
modopt/base/backend.py 42.18% <34.28%> (+9.57%) ⬆️
modopt/math/matrix.py 100.00% <100.00%> (+1.38%) ⬆️
modopt/opt/algorithms.py 92.53% <100.00%> (+2.22%) ⬆️
modopt/tests/test_opt.py 100.00% <100.00%> (+0.67%) ⬆️
modopt/tests/test_math.py 100.00% <0.00%> (+0.88%) ⬆️
modopt/signal/wavelet.py 66.66% <0.00%> (+3.33%) ⬆️
modopt/opt/proximity.py 93.20% <0.00%> (+7.44%) ⬆️
modopt/math/metrics.py 100.00% <0.00%> (+15.78%) ⬆️
... and 2 more

Continue to review full report at Codecov.

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* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>
modopt/tests/test_base.py Show resolved Hide resolved
modopt/tests/test_base.py Show resolved Hide resolved
* updated GPU dependencies

* added logo to manifest

* updated package version and release date
@sfarrens sfarrens marked this pull request as ready for review April 21, 2021 20:25
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@zaccharieramzi zaccharieramzi left a comment

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LGTM

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LGTM

@sfarrens sfarrens merged commit af01498 into master Apr 22, 2021
sfarrens added a commit that referenced this pull request Dec 10, 2021
* Version 1.5.1 patch release (#114)

* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* make algorithms a module.

* add Gradient Descent Algorithms

* enforce WPS compliance.

* add test for gradient descent

* Docstrings improvements

* Add See Also and minor corrections

* add idx initialisation for all algorithms.

* fix merge error

* fix typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>
Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
sfarrens added a commit that referenced this pull request Dec 17, 2021
* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

* Unpin package dependencies (#189)

* unpinned dependencies

* updated pinned documentation dependency versions

* Add Gradient descent algorithms (#196)

* Version 1.5.1 patch release (#114)

* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* make algorithms a module.

* add Gradient Descent Algorithms

* enforce WPS compliance.

* add test for gradient descent

* Docstrings improvements

* Add See Also and minor corrections

* add idx initialisation for all algorithms.

* fix merge error

* fix typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>
Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Release cleanup (#198)

* started clean up for next release

* update progress

* further clean up

* additional clean up

* cleaned up link to logo

* fixed index.rst

Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Pierre-Antoine Comby <77174042+paquiteau@users.noreply.github.com>
sfarrens added a commit that referenced this pull request Apr 8, 2022
* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

* Unpin package dependencies (#189)

* unpinned dependencies

* updated pinned documentation dependency versions

* Add Gradient descent algorithms (#196)

* Version 1.5.1 patch release (#114)

* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* make algorithms a module.

* add Gradient Descent Algorithms

* enforce WPS compliance.

* add test for gradient descent

* Docstrings improvements

* Add See Also and minor corrections

* add idx initialisation for all algorithms.

* fix merge error

* fix typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>
Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Release cleanup (#198)

* started clean up for next release

* update progress

* further clean up

* additional clean up

* cleaned up link to logo

* fixed index.rst

* fixed conflict

* Fast Singular Value Thresholding  (#209)

* add SingularValueThreshold

This Method provides 10x faster SVT estimation than the LowRankMatrix Operator.

* linting

* add test for fast computation.

* flake8 compliance

* Ignore DAR000 Error.

* Update modopt/signal/svd.py

tuples in docstring

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/signal/svd.py

typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/opt/proximity.py

typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* update docstring

* fix isort

* Update modopt/signal/svd.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/signal/svd.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* run isort

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* added writeable input data array feature for benchopt (#213)

* removed flake8 limit

Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Pierre-Antoine Comby <77174042+paquiteau@users.noreply.github.com>
sfarrens added a commit that referenced this pull request Apr 8, 2022
* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

* Unpin package dependencies (#189)

* unpinned dependencies

* updated pinned documentation dependency versions

* Add Gradient descent algorithms (#196)

* Version 1.5.1 patch release (#114)

* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* make algorithms a module.

* add Gradient Descent Algorithms

* enforce WPS compliance.

* add test for gradient descent

* Docstrings improvements

* Add See Also and minor corrections

* add idx initialisation for all algorithms.

* fix merge error

* fix typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>
Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Release cleanup (#198)

* started clean up for next release

* update progress

* further clean up

* additional clean up

* cleaned up link to logo

* fixed index.rst

* fixed conflict

* Fast Singular Value Thresholding  (#209)

* add SingularValueThreshold

This Method provides 10x faster SVT estimation than the LowRankMatrix Operator.

* linting

* add test for fast computation.

* flake8 compliance

* Ignore DAR000 Error.

* Update modopt/signal/svd.py

tuples in docstring

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/signal/svd.py

typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/opt/proximity.py

typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* update docstring

* fix isort

* Update modopt/signal/svd.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/signal/svd.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* run isort

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* added writeable input data array feature for benchopt (#213)

* removed flake8 limit

* updated patch version

Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Pierre-Antoine Comby <77174042+paquiteau@users.noreply.github.com>
chaithyagr added a commit that referenced this pull request Jan 19, 2024
* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

* Unpin package dependencies (#189)

* unpinned dependencies

* updated pinned documentation dependency versions

* Add Gradient descent algorithms (#196)

* Version 1.5.1 patch release (#114)

* Add support for tensorflow backend which allows for differentiability (#112)

* Added support for tensorflow

* Updates to get tests passing

* Or --> And

* Moving modopt to allow working with tensorflow

* Fix issues with wos

* Fix all flakes finally!

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/base/backend.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Minute updates to codes

* Add dynamic module

* Fix docu

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Fix 115 (#116)

* Fix issues

* Add right tests

* Fix PEP

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Minor bug fix, remove elif (#124)

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Add tests for modopt.base.backend and fix minute bug uncovered (#126)

* Minor bug fix, remove elif

* Add tests for backend

* Fix tests

* Add tests

* Remove cupy

* PEP fixes

* Fix PEP

* Fix PEP and update

* Final PEP

* Update setup.cfg

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update test_base.py

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Release cleanup (#128)

* updated GPU dependencies

* added logo to manifest

* updated package version and release date

Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* make algorithms a module.

* add Gradient Descent Algorithms

* enforce WPS compliance.

* add test for gradient descent

* Docstrings improvements

* Add See Also and minor corrections

* add idx initialisation for all algorithms.

* fix merge error

* fix typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>
Co-authored-by: Chaithya G R <chaithyagr@gmail.com>
Co-authored-by: chaithyagr <chaithyagr@gitlab.com>

* Release cleanup (#198)

* started clean up for next release

* update progress

* further clean up

* additional clean up

* cleaned up link to logo

* fixed index.rst

* fixed conflict

* Fast Singular Value Thresholding  (#209)

* add SingularValueThreshold

This Method provides 10x faster SVT estimation than the LowRankMatrix Operator.

* linting

* add test for fast computation.

* flake8 compliance

* Ignore DAR000 Error.

* Update modopt/signal/svd.py

tuples in docstring

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/signal/svd.py

typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/opt/proximity.py

typo

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* update docstring

* fix isort

* Update modopt/signal/svd.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/signal/svd.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* run isort

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* added writeable input data array feature for benchopt (#213)

* removed flake8 limit

* updated patch version

* [lint] pydocstyle compliance. (#228)

* [lint] pydocstyle compliance.

* use pytest-pydocstyle

* Power method: fix #211 (#212)

* Correct the norm update for Power Method

x_new should be divided by its norm, not by x_old_norm.

* fix test value

We are testing for eigen value of Identity. It should be one.

* fix WPS350

* fix test value for unconverged case

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Switch from progressbar to tqdm (#231)

* switch from progressbar to tqdm.

The progress bar can be provided externally for nested usage.

* exposes the progress bar argument.

* Child classes better have to implement these.

(my linter was complaining)

* update docs for progress bar using tqdm.

* fix WPS errors

* drop progressbar requirement, add tqdm.

* [lint] disable warning for non implemented function.

* simplify progbar check and argument passthrough

* Update README for tqdm dependency (#240)

Remote progressbar, use tqdm.

* add small help for the metric argument. (#241)

* add small help for the metric argument.

* RST validation

* use single quote

* use double backticks.

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* add implementation for admm and fast admm.

Based on Goldstein2014

* add Goldstein ref.

* WPS compliance.

* Abstract class for cost function.

* add custom cost operator for admm.

* fix WPS compliance.

* Ci update (#268)

* update python version support.

* use string for CI.

* remove flake8 and wemake-python-styleguide

This anticipates the change to black formatting.

* remove wps checks

* apparently conda does not support 3.11 for now

* remove all linting testing.

* fix np.int warning/error

* fix dtype error

* fix precision for doctest

* added black and isort support

* Update python version in README

* add 3.7 for test  back

* don't test 3.10 twice

* Test rewrite (#266)

* add MatrixOperator.

* move base test to pytest.

* [fixme] remove flake8 and emoji config.

* rewrite test_math module using pytest.

* use fail/skipparam helper function.

* generalize usage of failparam

* refactor test_signal.

* refactor test_signal, the end.

* lint

* fix missing parameter.

* add dummy object test helper.

* rewrite test for cost and gradients.

* show missing lines in coverage reports

* rewrite of proximity operators testing.

* add fail  low rank method.

* add cases for algorithms test

* add algorithm test.

* add pytest-cases and pytest-xdists support.

* add support for testing metrics.

* improve base module coverage.

* test for wrong mask in metric module.

* add docstring.

* update email adress and authors field.

* 100% coverage for transform module.

* move linear operator to class

* update docstring.

* paramet(e)rization.

* update docstring.

* improve test_helper module.

* raises should be specified for each failparam call.

* encapsulate module's test in classes.

* skip test if sklearn is not installed.

* pin pydocstyle

* removed unnormalised Gaussian kernel option and corresponding test

* Restrict scikit-image version for testing

* added fix for basic test suite

* set behaviour for different astropy versions

* updated docstring for gaussian_kernel

* Use example scripts as  tests. (#277)

* Initialize the example module.

* do not export the assert statements.

* add matplotlib as requirement.

* add support for sphinx-gallery

* Update modopt/examples/README.rst

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/examples/__init__.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/examples/conftest.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/examples/example_lasso_forward_backward.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* Update modopt/examples/example_lasso_forward_backward.py

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* ignore auto_example folder

* doc formatting.

* add pogm and basic comparison.

* fix: add matplotlib for the plotting in examples scripts.

* fix: add matplotlib for basic ci too.

* ci: run pytest with xdist for faster testing

---------

Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>

* fix: specify data_range for ssim.

Refs: #290

* typos.

* feat(test): add test for admm.

* feat(admm): improve doc.

* refactor: rename abstract cost to CostParent.

* feat: add test for fast admm.

* feat(admm): improve docstrings.

* style: remove extra line.c

* feat: make POGM more memory efficient.

* feat: add a dummy cost for the identity operator.

* feat: create a linear operator module, add wavelet transform.

* feat: add test case for wavelet transform.

* Update setup.py

---------

Co-authored-by: chaithyagr <chaithyagr@gitlab.com>
Co-authored-by: Samuel Farrens <samuel.farrens@gmail.com>
Co-authored-by: Pierre-Antoine Comby <77174042+paquiteau@users.noreply.github.com>
Co-authored-by: Pierre-antoine Comby <pierre-antoine.comby@crans.org>
Co-authored-by: Pierre-Antoine Comby <pierre-antoine.comby@ens-paris-saclay.fr>
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