remove conda gcc

CGATOxford · May 17, 2018 · 0a6d1fe · 0a6d1fe
1 parent 9a10749
commit 0a6d1fe
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Showing 3 changed files with 1 addition and 3 deletions.
diff --git a/conda/environments/pipelines-nosetests-template.yml b/conda/environments/pipelines-nosetests-template.yml
@@ -9,7 +9,6 @@ channels:
 dependencies:
 # system deps
 - nomkl
-- gcc
 - zlib
 # bioinformatics tools
 # python deps

diff --git a/conda/environments/pipelines-nosetests.yml b/conda/environments/pipelines-nosetests.yml
@@ -15,7 +15,6 @@ dependencies:
 - brewer2mpl=1.4.1
 - cgat-report=0.7.6.1
 - future=0.16.0
-- gcc=4.8.5
 - httplib2=0.10.3
 - intermine=1.09.09
 - matplotlib=2.1.0

diff --git a/install-CGAT-tools.sh b/install-CGAT-tools.sh
@@ -223,7 +223,7 @@ cd $CGAT_HOME
 
 log "downloading miniconda"
 # download and install conda
-curl -o Miniconda.sh -O http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
+curl -o Miniconda.sh -O https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
 # Conda 4.4 breaks everything again
 # Conda 4.5 looks better
 #curl -o Miniconda.sh -O https://repo.continuum.io/miniconda/Miniconda3-4.3.31-Linux-x86_64.sh