Add FAQ entry re identification of possible duplicates reads/pairs (#… #113
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name: Python package | |
on: [push, pull_request, workflow_dispatch] | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: ["3.7", "3.8", "3.9"] | |
os: [ubuntu-latest] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install flake8 nose pep8 pyyaml | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Install | |
run: | | |
python setup.py install | |
- name: Test with nosetests | |
run: | | |
export PYTHONHASHSEED=0 | |
nosetests -v tests/test_umi_tools.py |