Merge pull request #309 from CGATOxford/{TS}-WhitelistFilterPosErrors

{ts} whitelist filter pos errors
CGATOxford · Feb 6, 2019 · f9518fa · f9518fa
2 parents e1bcbbb + b4c6871
commit f9518fa
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Showing 8 changed files with 12,396 additions and 11 deletions.
diff --git a/group_dir_per_gene_py3.tsv b/group_dir_per_gene_py3.tsv
diff --git a/group_dir_unmapped_py3.tsv b/group_dir_unmapped_py3.tsv
diff --git a/tests/indrop_whitelist_3_errors.tsv b/tests/indrop_whitelist_3_errors.tsv
diff --git a/tests/indrop_whitelist_ed_above_thres_corr.tsv b/tests/indrop_whitelist_ed_above_thres_corr.tsv
@@ -0,0 +1,379 @@
+AAAACGCCTATGACTTT		5	
+AAAACTCGACATCGCAG		5	
+AAAAGTCGGTCCTTATT		6	
+AAAATCGTTGCTCTAGT	AAAATCGTTACTCTAGT	6	1
+AAAGGTAATACACTAAG		10	
+AAAGTAATCAGAACGGG		7	
+AAATCGGGTCACGGACT		7	
+AAATCGGGTGGCGTTAG	AATGCGGATGGCGTTAG	11	1
+AAATGAATGTGTAGTTT	AAATGAATGTGTGGTTT	9	1
+AACCCATATTAACCATC		15	
+AACGAAACGGTTCAACT		15	
+AACTCACCGAGGAAGAC		9	
+AACTCACCGCCTATTCA		9	
+AACTGAGTTTGCCTCAC		7	
+AAGACACCACTAGATTG	AAAACGCCTCTAGATTG	7	1
+AAGATGGCTATGGGCAC		11	
+AAGATGGCTGATCTCGG		6	
+AAGATGGCTTGATGCCC		7	
+AAGATGGCTTGGCTACC	AAGATGGCTAGGCTACC	11	1
+AAGCGAAGTATTCAGTA		10	
+AAGCGAAGTCTCCGCAT		8	
+AAGCGAAGTTCACCGAG		5	
+AAGCGCCTTTGTTTGAG		6	
+AAGCTTCTGCTTACCT		7	
+AAGTGAAAGATATGCAT	AAGTGAAAGTCATGCAT	5	1
+AATACTCTTAATTCCCA		13	
+AATACTCTTACACTAAG		10	
+AATACTCTTCACAAGGC	AATACTCTTGACAAGGC	5	1
+AATATACCTAGGCAGTT		8	
+AATCCCACGATCAGCGC		11	
+AATCCCACGCACGGACT		9	
+AATGTTTGCCCTTCAG		6	
+AATGTTTGGGGAACCT	AATGTTTGAGGAACCT	5	2
+ACAGGTGTCAAATCAGA		9	
+ACCATTTGATCCCAATC	ACCCTTGGTTCCCAATC	7	1
+ACCCACGAGGGTTGGT	ACCCACGAAGGTTGGT	9	1
+ACCCGACTTGTTGTCAT	ACCCGACTTATTGTCAT	6	1
+ACCCGACTTTGCAAGGG		9	
+ACCCTAACCATGGATTA	ACCGCAACTATGGATTA	10	1
+ACCCTTGGTAAGCGTAC		5	
+ACCGTGTTTTGGTTTCT	ACCGTGTTTTAGTGTTT,ACCGTGTTTTGAGGTCT	10	1,1
+ACCTTCTTACTTCAAT		6	
+ACCTTCTTCTTTCTTT	TCATCCTTCTTTCTTT	10	1
+ACCTTCTTTTGGATCG	ACCTTCTTTTGGCTTG,CCCATCTGTTGGATCG	12	1,3
+ACGCTCTCAACTAGCCA	ACGCTCTCAGTTAACCA	6	1
+ACGTGCTAGTCGGTTTA		17	
+ACTAGATTGACTAGGAT		11	
+ACTAGATTGTCGGTACG	ACTAGATTGTCGGTAGC	14	1
+ACTTAGGTAAGTGATGC		7	
+ACTTCAATCTTTAATC	ACTTCAATCTTTTTTT	5	1
+ACTTCAATTGGGATTC		14	
+AGAGACTAACTGCCGT		8	
+AGAGACTATGAAATGA	AGAGACTATGTAATGA	11	1
+AGAGACTATGACGGAC		10	
+AGAGGTGGCCCATCTG		9	
+AGAGGTGGCGACGTCA		5	
+AGATGTATTAAGCTTCT	AGATGTATTACGCTTCT	7	1
+AGATGTATTCCACATTA		8	
+AGATGTATTTGTACACG		10	
+AGCAACCTGCGGCTTAC		8	
+AGCACCTCTTACCAGGC		6	
+AGCCAAGATTGAGGTCT		13	
+AGCCTCTTTAATTCCCA	AGCCTCTTTCAGTCCCT	10	8
+AGGCAACGTCATATGG		13	
+AGGCAACGTTTAACAG		9	
+AGGCCTAAGGGTGGGAT		5	
+AGGGAACGACTTCGCAC		9	
+AGGGAACGATTGCATAT		9	
+AGGGAAGGTGGCGTTAG	CGGGAAGGTGGCGTTAG	9	1
+AGGGCCAATTCTCACTT	AGGGCCAATTCACGTTT	5	1
+AGGGTGTATCAGTTTGC		8	
+AGGGTGTATGACAGATA	AGGGCCAATGACAGATA,CGGGTGTATGACAGATA	5	1,1
+AGGTTAGTGAAGGTAAT		10	
+AGGTTAGTGTCGAAGCT	AGGTTAGTGACCACGCT,CGGTTAGTGTCGAAGCT	6	3,1
+AGTATGAGTCCCATCTG	AGTATGAGTCCCGACTT	5	1
+AGTATGAGTTGCCTCAC	AGTATGAGTAGCCTCAC	7	1
+AGTCAAAGACCTGACAC	AAGCAAAGTCCTGACAC	7	1
+AGTCAATACACTGCCGT	AGCCAAGATACTGCCGT,CGTCAATACACTGCCGT	5	1,1
+AGTGTCGGACGGGCTTT		6	
+AGTTTACGTACTAGGAT		5	
+ATAGTCGCAATCAAGTG		6	
+ATAGTGGACCGAGATGT	ATAGTGGACGGAGATGT	6	1
+ATCACGTTTAATGACCC	ATCACGTTTACTGACCC,ATCACGTTTCCTGACAC	10	1,1
+ATCACGTTTCCACATTA		8	
+ATCACGTTTCGAATAAT		5	
+ATCACGTTTTCATATGG	ATCACGTTTTCATAGGT	7	1
+ATCCGCTATGTAAAGG		6	
+ATCGGTTCGAACCTGAC		11	
+ATCGGTTCGCAAGTCAT		6	
+ATCGGTTCGGATTAGAC	ATCGGTTCGGATTAACA,ATCGGTTCGTTTTAGAC	10	1,1
+ATCTTTGTGTCCATGT	ATCTTTGTATCCATGT,ATCTTTGTCTTCAGGT	6	1,3
+ATCTTTGTTAACCATC	ATCTTTGTTGACCAGT	7	1
+ATGCTCCGTGTTACGAT		9	
+ATGGCCTGTAATGTTTG	ATGCTCCGTAATGTTTG	9	1
+ATGGCCTGTAGCACCAC		7	
+ATGTGTCCTATGGAAAT	ATGTGTCCTGTGGAAAT	13	1
+ATGTGTCCTGCTTTGGC	ATATGTCCTGCTTTGGC	6	1
+ATGTGTCCTTAACCATC		6	
+ATTCCAGACTTGTGACT	ATTCCAGACTTGAGGGT	7	1
+ATTGATTCTTGTAAAGG	ATTGATTCTTGTAAAGA	6	1
+ATTGTGACTTCCGTCCA		6	
+ATTTCCGGCGAATAAT	ATTTCCGGCAATTAGT,CTTTCCGGCGAATAAT	8	2,1
+ATTTCCGGTACTTGTG		9	
+CAGTTTGCGGCGTTAG	CAGTTTACGGCGTTAG	7	1
+CATCGCAGCGACTCCT		5	
+CATCGCAGCTTCAGGT		6	
+CATCGCAGTTATAGCC		14	
+CCAACCGTCCACATTA		7	
+CCAACCGTCGGGCTTT		9	
+CCAACCGTGTTCAACT		12	
+CCAACCGTTAGTCTAG		7	
+CCGCTGTTATCAGCGC		8	
+CGAACGTAATACTCTT	CAAACGTAATACTCTT	7	1
+CGAACGTAGGCGTTAG	CGAACGTAGGAGTTAG	9	1
+CGAACGTATCCCAATC	CGAACGTATGCGTATC	10	1
+CGCTAATAGCATGGGT		5	
+CGGCACATTTTGTGTC		5	
+CGGCTTACAGAGGTGG		6	
+CGTATTTCTTGCATAT	CGTAATTCTTGCATAT	9	1
+CTATAGAGCGAACGTA		5	
+CTATAGAGTGCCATCG	CTATAGAGTGCTATTT	6	1
+CTTACGGGTAGCTTAT	CTTCAGGTTAGCTTAT	10	9
+CTTCAGGTGGATAAAG		9	
+CTTCGATTCTCGCGTA		6	
+CTTCGATTGCGTTGCT	CTTCGATTGAGTTTCG,CTTCGATTTCGTTGCT	7	1,1
+CTTCGATTTAAATAGG	CTTCGATTTAAATAGT	11	1
+CTTTAATCCGCTCTCA		6	
+CTTTAATCGGGAGGTA	CTTTAATCAGGAGGTA,CTTTAATCTGGAGGTA	7	2,1
+CTTTCTTTATTCCTTG		5	
+CTTTCTTTGGAGAAGC	CTTTCTTTAGAGAAGC	5	2
+GAAAGATTGTGCTTACCT	GAAAGATTGTACTTACCT	8	3
+GAAAGCGTACGTTAACCA	GAAAGCGTACATTAACCA	8	1
+GAACACTAAGATGGAAAT	GAACACTAAGTTGGACTT	8	3
+GAACACTAAGTGGTATGA		7	
+GAACGCCATTATTTCCGG		8	
+GAACGCCATTCATCGCAG		11	
+GAACGCCATTTCTCAACC		13	
+GAACTGCCGTGTCAATAC	GAACTGCCGTTTCAATAC	11	1
+GAAGGAAGACCAGATTAC		6	
+GAAGGCAGTTATATGCAT		9	
+GAAGGCAGTTCAGTTTGC		10	
+GAAGTTTAGAAGGCAACG		11	
+GAATTCCTTGATTGGGCC		6	
+GAATTCCTTGTGACCCTC	GAATTCCTTGAGACCCTC	7	1
+GACACGGACTACCTTGCC		7	
+GACACGGACTCACGGACT	GACACGGACTCGCGGACT,GATACAAACTCACGGACT	9	1,3
+GACACGGACTTTAAGCGT		5	
+GACAGTCCCTTAACCATC		6	
+GACATTTGTTGAATACGC	GACATTTGTTGAATACGA	13	1
+GACATTTGTTTTTAACAG		7	
+GACCACATTATGCAAGGG		9	
+GACCCGAATGAATGACCC		8	
+GACCCGAATGTGACCAGT		7	
+GACCTACTAGCCTACTAG	GACCTACTAGCCTACTAA	11	1
+GACCTACTAGGGTGGGAT	GACCTACTAGAGTGGGAT	11	1
+GACCTACTAGTGCGTATC		6	
+GACGAATAATAAGATTGT		5	
+GACGACTCCTTGACCCTC	TACGACTCCTTGACCCTC	5	1
+GACGACTCCTTGGTTTCT		5	
+GACGAGATGTCACGGACT		5	
+GACGAGATGTGGATAAAG		6	
+GACGAGATGTGTTTGTTT	GACGCGATGTGTTTGTTT	15	1
+GACGAGATGTTCGGTTTA		8	
+GACGAGATGTTGCGTATC	GATGAGAAGTTGCGTAAC	5	1
+GACGCTAGTCTGAGGTCT		9	
+GACGTCAGCACGTACCTA		5	
+GACTGTCTGGCTCTTGAC	GACTGTCTGGCTCTTGAA	8	1
+GACTGTCTGGTACAGCCG		6	
+GACTTACTCCTCCGTCCA		9	
+GACTTCTTCGATCCCACG		6	
+GAGAAGGCTTACATCTAT		7	
+GAGAAGGCTTGAATACGC	GAGAAGGCTTAAATACGC	7	1
+GAGAATACGCCGGCACAT		5	
+GAGAATTCGTATGGGCAC		6	
+GAGACAGATAAGTTTAGA		6	
+GAGAGAATTGATATGCAT		7	
+GAGAGAATTGATGGAAAT		6	
+GAGAGAATTGGATCGTTT		5	
+GAGAGAATTGGCATGGGT		8	
+GAGAGAATTGTACTTGTG	GAGAGAAATGTACCAGTG	5	1
+GAGAGAGTATATTCGACG	GAGAGAGTATATTCCTTG	6	1
+GAGAGCCCATTTTGTGTC		8	
+GAGATCTCGGCAATTAGT		5	
+GAGATCTCGGTGTAGTTT	GAGATCTCGGTGTATTTG,GAGGTCTCGGTGTAGTTT	9	1,1
+GAGATTGCGACTAGTAAC		5	
+GAGATTGCGAGTTACGAT	GAGATCTCGGGTTACGAT,GAGATTGCGAATTACGAT	5	1,1
+GAGCGTTGCTATCAAGTG		8	
+GAGCGTTGCTATTCCTTG		9	
+GAGGCGTTAGCTTCAGGT		5	
+GAGGGAACCTTGCCATCG	GAGGAAACCTTGCCATCG	6	1
+GAGGTCCCTTGAGTTTCG		8	
+GAGTCCAAAGATGGATTA		5	
+GAGTCCAAAGCGAATAAT	GAGTCCAAAGCGAATAAA,TAGTCCAAAGCGAATAAT	6	1,1
+GAGTCCAAAGGGGAGGTA		5	
+GAGTCCAAAGTAGCCTCG	GAGTCCAAAGTAGTCGCA	8	1
+GAGTTTCGCAAGAGGG	GAGTTTCGCGAGATGT	5	1
+GAGTTTCGGTAATCCC		10	
+GATAAGACGGCTTACTCC		7	
+GATAAGACGGTAACCCGT		7	
+GATACAAACTATGGAAAT	GATACAAACTATGAAATG	5	1
+GATACAAACTGTAACGTT	GATACAAACTGTTCTGTT	7	1
+GATAGTGTTTACACTAAG		5	
+GATCCGTCCACGCTAATA	GATCCGCCCACGCTAATA	5	1
+GATCGGTACGCCAGCAGT	GATCGGTACGCCAGCAGG	8	1
+GATCGGTTTATTCGGCCT	GATCGATTTATTCGGCCT	7	1
+GATCTCAACCTGGCCTGT	GATCTCAACCTAGCCTCG,GATCTCAACCTGACCTGT	6	3,1
+GATCTGTGGTGGGTTGGT		5	
+GATCTGTGGTTTTGTGTC		7	
+GATGACCCTCGGCCCTTA		6	
+GATGAGGTCTAGAAGTCC		6	
+GATGAGGTCTTGACCCTC	GATGAGGTCTTTCCGCTC	7	1
+GATGAGGTCTTTGTTTAC	GATGAGGTCTTTGATTCT	7	1
+GATGAGGTCTTTTAACAG		6	
+GATGGGATTCCGGCACAT	GATGGGATTCCGTCACAT	5	1
+GATGGGATTCTCGGTTTA		7	
+GATGGTTTCTTTGAGGGT	GATGGTTTCTTCGAAGCT,GATGGTTTCTTTGAGGTT	5	2,1
+GATGTAAAGGCCCTTCAG		7	
+GATGTACACGCATCTCCC		7	
+GATGTAGTTTCAGATTAC		12	
+GATGTAGTTTCTTACTCC		8	
+GATGTGAGCGAATAAT	GATGTGAGCGAATATG	7	1
+GATGTGAGGCAAAGCC	GATGTGAGGCAAGGCC	11	1
+GATTAGACTAACTACT		10	
+GATTAGACTGGCCTGT	GATTAGACAGGCCTGT	6	1
+GATTCCGAGTATGGGCAC		5	
+GATTCCGAGTCTTTCTTT		11	
+GATTGAGGGTAACCTGAC		12	
+GATTGGCGTTGGTCCCTT	GATTGGCGTTTGACCCTC	5	1
+GATTGGCGTTTAGTCTAG		7	
+GATTTAACAGGATGTGAG		8	
+GATTTAACAGTAACTACT		13	
+GATTTAACAGTCATATGG		6	
+GCAGCATGACACTAAG	GCAGCATGACACTCAG	6	1
+GCAGCATGATGGGCAC	CCAGCATGATGGGCAC	7	1
+GCTTACCTCTACTTGT	GCTTACCTCTTCTTCG	8	1
+GGAAACAGTCCCAATC	GGAAACAGTACCAGGC,TGCGACAGTCCCAATC	6	3,1
+GGAGAAGCCCACATTA		5	
+GGATAAAGAGAGACTA		5	
+GGCATGCTTTCCGCTC		6	
+GTCTCTCTAACTTAGC	GTCTCTCTAACGTAGC	7	1
+GTCTCTCTATTTCCGG	GTCTCTCTAATTCCCA,GTCTCTCTATTTCGGG	11	1,1
+GTCTCTCTTGCGACAG		7	
+GTGTAACCTGCGACAG		5	
+GTTCAACTCCGTGTTT	GTTCAACTCACAGTTT,GTTCAACTCCGTTTTT	6	1,1
+GTTCAACTTACAGCCG	GCTCTAGTTACAGCCG,GTTCAACTTACCGGCA	5	1,1
+GTTCAACTTGACCAGT		7	
+GTTCAACTTGATGCCC		15	
+GTTGCACGCGATTGAT		5	
+GTTGCACGTGTAGTTT	GTTGCACGTGTAGTTG	7	1
+GTTTGTTTCTCCGCAT	GTTTGTTTTTCCGCTC	9	1
+GTTTGTTTGGAAACAG		5	
+TAACTACTAGGCAACG		12	
+TAACTACTTTAAGCGT		5	
+TACAGCCGACCTTGCC		10	
+TACAGCCGGTTGCACG	TACAGCCGGCAGCATG,TACAGCCGGTTGCACA	11	1,1
+TACAGCCGTCGGTACG		7	
+TACTTGTGTACAGCCG		8	
+TACTTGTGTGTTCCAG	TACTTGTGTATTCCAG	10	1
+TAGCTTATCGGCACAT		7	
+TAGTCTAGCGACGTCA	TAGTCTAGCGACGTCC	6	1
+TAGTCTAGTTATAGCC		5	
+TAGTCTAGTTGATCTA	AGGCCTAGTTGATCTA	7	1
+TCATATGGTCTGCATC	TCATATGGACTGCATC,TCATATGGTCAGCCCC	5	2,1
+TCATCCTTCGTATTTC		10	
+TCATCCTTTCCAGTCC	TCATCCTTTCTAGTCC	6	1
+TCATCCTTTTCCGCTC	TCCTTATTTTCCGCTC,TTATCCTTTTCCGCTC	8	1,1
+TCCTTATTCAGTCCCT		10	
+TCCTTATTTAGTCTAG		6	
+TCGAAGCTTGCCTCAC		8	
+TCGAAGCTTTCCGAGT	TCGAAGCTTTCGGCCT	6	3
+TGAAAACTGGTAACTTAGC		8	
+TGAAAACTGGTCCCATCTG	TGAAAACTGGTCCCATCTA	8	1
+TGAAAACTGGTCTTTAATC		6	
+TGAAACAATCCATATGCAT		12	
+TGAAACACACGCTTTCTTT	TGAAACACACGCCGTGTTT,TGAAACACACGCTTTAATC,TGAAACACACGCTTTCTTA	16	1,1,1
+TGAAACCCTTGAATGTTTG		6	
+TGAAACCCTTGCAATTAGT		9	
+TGAACATCTATGAGCCCAT	TGAACATCTATAAGCCCAT,TGAACATCTATGAGCACAT	8	1,1
+TGAACGCTCAGTGACCCTC	TGAACGCTCAGTGACCTCA,TGAACGCTCAGTGACTCTC	12	1,1
+TGAAGAAGTTAACTTCAAT		5	
+TGAAGAAGTTACACAAGGC	TGAAGAAGTTATACAAGGC	5	1
+TGAAGCGTAGGCCTACTAG		9	
+TGAAGGAGCTTTCGAAGCT		7	
+TGAAGGTTGTGGCAGTCGA		8	
+TGAAGGTTGTGGCTTTGGC	TGAAGGTTGTGGCTTTTGC	5	1
+TGAAGGTTGTGGGAAACAG	TGAAGGTTGTGAGAAACAG	7	1
+TGAATACCCAGTCGGTACG	TGAATACCCAGTCGGTATG	11	1
+TGAATGAAGCACATTTGTT	TGAATGAAGCACATTTTTA	6	1
+TGAATGACTTTGAATACGC	TGAATGACTTTAACTACTC	9	3
+TGAATGCATGGCATCTCCC	TGAATGCATGGCATCGCAG	10	5
+TGAATTCGACGGCGTTGCT		10	
+TGACAACAAATTAGTGTTT	TGAAAACAAATTAGTGTTT	7	1
+TGACAAGTCATTTAAGCGT		7	
+TGACAATACTTATTCCTTG	TGACAAGTCATATTCCTTG,TGACAATACTTATTTCCGG	16	6,1
+TGACACAACAGGAGCGGTA		7	
+TGACACAACAGTGATGCCC		6	
+TGACACAGTTTATATCTTC	TGACACAGTTTCTTTCTTT	9	1
+TGACACAGTTTTGTACACG		9	
+TGACACTTTCTAGCACCAC		5	
+TGACACTTTCTGACGATGG		9	
+TGACAGACCATGGTCCCTT	TGACAGACCATAGTCCCTT	10	1
+TGACATACATTTACAAACT	TGACATACATTAACAATCC	10	1
+TGACCAGCAGTCCACATTA	TGACCATTACTCCACATTA	6	1
+TGACCAGTGTCAAAGA		7	
+TGACCATTACTCTTACTCC		11	
+TGACCATTACTGTCCAAAG	TGACCATTACTTTCCAAAG	11	1
+TGACCTCGTCTAGGAAGAC		7	
+TGACCTCGTCTCGAGATGT		9	
+TGACCTCGTCTTGCTATTT	TGACCTCATCTTGCTATTT,TGACCTCGTCTTCCTATTT,TGACCTCGTCTTGCTATTC	6	1,1,1
+TGACCTCGTCTTTCACATA		11	
+TGACGTAGAAGCAACAAAT	TGACGTAGAAGCGAATAAT	9	1
+TGACGTAGAAGTTATAGCC	TGACGTAGAAGTTATACCA,TGACTCAGAATTTATAGCC	9	1,6
+TGACTACCGTTTTTGGGAG		6	
+TGACTACGAGCCCTACTAG		7	
+TGACTCAGAATCATCTCCC		10	
+TGACTGTTCTTACTTCAAT	TGACTGTCCTTACTTCAAT	8	1
+TGAGAAGCACTCCCATCTG	TGAGAAGCACTCCCATGTG	11	1
+TGAGAAGCACTGTTTGTTT		6	
+TGAGACAAAGGATTTCCGG	TGACACAAGGCATTTCCGG	8	1
+TGAGACAACTTCAGTTTGC	TGAGACAACTTCGGCTTAC	8	2
+TGAGAGTTCACTCGACACC		13	
+TGAGCAGGGTATTTGTGTC	TGAGTAGGGTATTTGTGTC	13	1
+TGAGCCGGATTATCCCACG		8	
+TGAGCGCATTCCCTATTCA	TGAGCGCATTCGCTATTCA	6	1
+TGAGCGCATTCCGTCAGCA		8	
+TGAGCGCATTCTCGGTACG		11	
+TGAGGAATAGAGGCATGCT		6	
+TGAGGAATAGATAGCTTAT	TGAGGAATAGAGAGCCCAT	7	1
+TGAGGTTTCTCAGCACCAC	TGAGGTTTCTCAGCACCAT	10	1
+TGAGGTTTCTCGATTGCGA	TGAGGTTTCTCAATTGCGA	5	2
+TGAGTACACTCGAATACGC		6	
+TGAGTCCATGTCAAGAGGG		11	
+TGAGTCCATGTGGCGGTTT	TGAGTCCATGTGGTGGTTT	5	1
+TGAGTCCATGTTCTCAACC	TGAGTCCATGTTCTCAAAC,TGAGTCCATGTTGGCTACC	11	1,1
+TGAGTCCGTACGTTGTCAT	TGAGTCCGTACATTGTCAT	5	3
+TGAGTCGTCGTGAGCCCAT	TGAGTCGTCGTCAGTCCCT	5	1
+TGAGTGGAGCTATGACCGA	TGAGTGGAGCTATCAACGC	9	1
+TGAGTGGAGCTCTTCTTCG	TGAGTGGAGCTTTTGTTTG	7	1
+TGAGTGGAGCTTCCCAATC		12	
+TGAGTGGAGCTTGCAAGGG		11	
+TGAGTGGAGCTTTTAACAG		5	
+TGAGTTCTGTTTCGACACC	TGAGTTCTGTTTCGACACT	5	1
+TGATAACCCGTATTCAGTA		11	
+TGATAACCCGTTTCGGCCT		14	
+TGATACGTGCTAGTGAAAG	TGATACGTGCTATGGAAAT	7	1
+TGATACGTGCTCGAGATGT	TGATACGTGCTCGATGTCT	5	1
+TGATACGTGCTGTTCAACT		10	
+TGATAGAAATGGGTGGGAT	TGATAGAAATGGGTGGAAT	6	1
+TGATAGAAATGTGACCCTC	TGATAGAAATGAGACCCTC,TGATAGAAATGTGACCCTT	10	2,1
+TGATATTGCCTAAATCAGA		14	
+TGATCACCGAGCGCTAATA		7	
+TGATCACCGAGTAGTCTAG		5	
+TGATCCCGTAGCCGCTGTT		10	
+TGATCCCGTAGTTGCATAT	TGATCCCGTCGTTGCATAT	13	1
+TGATCGTCATGTGCGACAG		6	
+TGATGTCTTTCGGTGGGAT	TGATGTCTTTCACTAGGAT	7	1
+TGATGTTTGAGACACTAAG	TGATGTTTGAGGCACTAAG	9	1
+TGATTCGCTGGCGAATAAT	TGATTCGCTGGCGAATATG	7	1
+TGATTCGCTGGGCATGGGT	TGATTCGCTGGACATGGGT	5	1
+TGATTCGCTGGTTAAACTG		11	
+TGATTGCACGCTGTGCTCA		8	
+TGATTGTCGCCCGGCACAT	TGATCGACACCCGGCACAT	6	1
+TGATTTACCCTAGAGACTA	TGATTTACCCTAGAAACTA	12	1
+TGATTTACCCTGAATACGC		7	
+TGCCTCACCTTCTGGA		5	
+TGCGACAGCTTTCTTT		5	
+TGCGACAGGGCGTTAG		6	
+TGGCTACCTAGCTTAT	TGGCTACCGAGCCCAT,TGGCTACCTGGTTTCT	9	4,2
+TGGCTACCTGCCATCG		7	
+TGGTATGAAGAGACTA		8	
+TTAAGCGTGACAAAGG	TTAAGCGTTACAAACT	8	1
+TTAAGCGTGAGCCCAT		6	
+TTATCTGTATGGGCAC		8	
+TTATCTGTCGAATAAT	GTCTCTCTCGAATAAT	10	8
+TTATCTGTTTATCTGT		7	
+TTGCATATAGGCAACG	TTGGACTTAGGCAACG	5	3
+TTGCATATCGAATAAT		10	
+TTGGACTTGAGTTTCG		15	
+TTTGTGTCCAGATTAC		8