Ts add quality filtering #33
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Looks fine, but we should make sure we test it on single and paired-end files, with UMIs on the 3' and 5' end. |
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Agreed. I'll do this tomorrow. |
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@IanSudbery Checked on single/paired, 3'/5' and all seems OK. Updated now so that only the UMI bases from the pattern are checked for quality. Previously all positions in the bc-pattern were checked. |
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Implements quality score filtering for UMI bases.
See #29
@IanSudbery Would you mind checking this.