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change back to original matplotlib backend #640

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merged 2 commits into from
Apr 24, 2024
Merged

change back to original matplotlib backend #640

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1177db9
change back to original matplotlib rcParams
sshen8 Apr 23, 2024
ef41a57
capture recent params
sshen8 Apr 24, 2024
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9 changes: 7 additions & 2 deletions umi_tools/whitelist_methods.py
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Original file line number Diff line number Diff line change
Expand Up @@ -11,8 +11,6 @@
import copy
import regex

# require to run on systems with no X11
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import matplotlib.lines as mlines

Expand Down Expand Up @@ -100,6 +98,11 @@ def getKneeEstimateDensity(cell_barcode_counts,

if plotfile_prefix:

# change back to original user params after plotting
_rcParams_orig = matplotlib.rcParams.copy()
# require to run on systems with no X11
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matplotlib.use('Agg')

# colour-blind friendly colours - https://gist.github.com/thriveth/8560036
CB_color_cycle = ['#377eb8', '#ff7f00', '#4daf4a',
'#f781bf', '#a65628', '#984ea3',
Expand Down Expand Up @@ -244,6 +247,8 @@ def getKneeEstimateDensity(cell_barcode_counts,

outf.write("%s\t%s\n" % (local_mins_count, threshold_type))

matplotlib.rcParams.update(_rcParams_orig)

return final_barcodes


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