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fix rename_transcripts test for gtf2gtf.py (#361)
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sebastian-luna-valero authored Sep 27, 2017
1 parent b74b75d commit 5ea6aa0
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6 changes: 3 additions & 3 deletions tests/gtf2gtf.py/tests.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -181,11 +181,11 @@ rename_gene:
references: [hg19.small.sort_gene_rename.gtf.gz]
options: --method=rename-genes --map-tsv-file=<DIR>/hg19.small.gene_map.tsv

rename_transcript:
rename_transcripts:
stdin: hg19.small.sort_gene.gtf.gz
outputs: [stdout]
references: [hg19.small.sort_gene_rename_transcript.gtf.gz]
options: --method=rename-genes --map-tsv-file=<DIR>/hg19.small.transcript_map.tsv
references: [hg19.small.sort_gene_rename_transcripts.gtf.gz]
options: --method=rename-transcripts --map-tsv-file=<DIR>/hg19.small.transcript_map.tsv

add_protein_id:
stdin: hg19.small.sort_gene.gtf.gz
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