Code

dynamics: add implicit VP solver#491

Code

Merged

apcraig merged 196 commits intoCICE-Consortium:masterCICE-Consortium/CICE:masterfrom phil-blain:parallel-picardphil-blain/CICE:parallel-picardCopy head branch name to clipboardSep 22, 2020

+4,599-250

Commits

Commits on Aug 25, 2020

• initial coding of ice_dyn_vp.F90

  

  JFLemieux73

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  phil-blain

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  ccf9ba5

• code (matvec, bvec and residual) now compiles after debugging

  

  JFLemieux73

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  460d360

• introduced calc_vrel_Cb and calc_visc_coeff subroutines and precond.F90 file

  

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  322b9c4

• after debugging...now compiles

  

  JFLemieux73

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  cbd7b8d

• in process of adding precondD

  

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  1195bc0

• precondD is in progress

  

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  a7074df

• I finished coding precondD...it compiles

  

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  9363913

• added calculation for L2norm

  

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  ae15ace

• modif to ice_step_mod.F90 for call to imp_solver

  

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  35babdd

• now form complete vectors by alternating u(i,j) and v(i,j) and so on

  

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  b793f7f

• added simple routine to form a vector

  

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  4a8a3f8

• corrected bug for vectors of size ntot

  

  JFLemieux73

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  a8eecfe

• added vectors of size ntot to bvec and matvec

  

  JFLemieux73

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  8245a45

• step back...not so easy to form all the vectors for the blocks...

  

  JFLemieux73

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  18fc896

• new subroutine for assembling ntot vectors

  

  JFLemieux73

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  4a3e1f2

• In the process of adding the call to fgmres

  

  JFLemieux73

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  0690b1e

• new subroutine to convert vector to the max_blocks arrays

  

  JFLemieux73

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  4dc1a09

• ice_dyn_vp compiles...I now need to make fgmres.F90 compile...

  

  JFLemieux73

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  a5112d8

• added BLAS routines needed by fgmres

  

  JFLemieux73

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  5cd50a8

• added the fgmres.F90 routine...does not compile yet...

  

  JFLemieux73

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  1d1eeb0

• minor modif to fgmres.F90

  

  JFLemieux73

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  bada6d7

• bug in call to arrays_to_vec instead of vec_to_arrays

  

  JFLemieux73

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  8901ccf

• Remove fgmres.F90 (MPI version, will re-add GEM version later)

  Show description for 89bf00a
  phil-blain

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  89bf00a

• added serial fgmres for testing

  

  JFLemieux73

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  bc803ea

• modified code for serial tests

  

  JFLemieux73

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  c426123

• after debugging...

  

  JFLemieux73

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  4e36b41

• added code to put sol vector in uvel and vvel arrays at the end of fgmres

  

  JFLemieux73

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  2139aef

• modified tinyarea calc for VP (punyVP=2e-9)

  

  JFLemieux73

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  502bab0

• modified location of allocation for some variables...

  

  JFLemieux73

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  f6be97e

• small bug corrected in allocating variables

  

  JFLemieux73

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  d7316c4

• introduced capping of the viscous coeff following Kreysher

  

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  def1bab

• added a relaxation to uvel,vvel to try to get nonlinear conv

  

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  933fa43

• modif to relaxation calc...minor

  

  JFLemieux73

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  9779b0c

• I found a bug in my 1st implementation. The dsig/dx term related to the rep pressurer should be on the RHS...in the process of correcting this

  

  JFLemieux73

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  f7c276a

• Pr is now calc with zeta

  

  JFLemieux73

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  aad62bf

• dPrdx is now in calc_bvec

  

  JFLemieux73

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  1eb6373

• removed Pr part from stress_vp calc

  

  JFLemieux73

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  fa0604b

• minor modifs to improve print of res norm in fgmres

  

  JFLemieux73

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  74c2b82

• added linear conv criterion based on a gamma

  

  JFLemieux73

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  ea595d8

• added NL conv criterion

  

  JFLemieux73

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  4f33964

• in the process of adding precond diag

  

  JFLemieux73

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  4ad3875

• now forms the vector diagvec

  

  JFLemieux73

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  422c724

• precond diag is completed and compiles

  

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  373d81a

• diagvec was not allocated...now ok

  

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  7ea59d5

• diagvec was not deallocated...now ok

  

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  12af0f2

• fixed bug in formDiag_step2

  

  JFLemieux73

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  4771f9c

• small modif

  

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  0e1be0b

• small modif...again

  

  JFLemieux73

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  2dfa648

• modified formation of diagonal for precond

  

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  65eb209

• just removed a comment

  

  JFLemieux73

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  c0c94e4

• minor modif to formDiag_step1

  

  JFLemieux73

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  e5ddf7c

• added an option for precond (free drift diag or complete diag

  

  JFLemieux73

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  c89ce45

• minor modif

  

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  9f75ad1

• minor modif

  

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  3b01585

• removed OLDformDiag_step1

  

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  4f601bc

• Ok I think I know what was wrong with the precond diag...I have to use icellu and not icellt

  

  JFLemieux73

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  b1c4a8b

• precond 3 works but not as good as precond 2 (free drift)...removed OLD code

  

  JFLemieux73

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  adb70e7

• ok found the problem in step2...now fixed

  

  JFLemieux73

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  b16cd8a

• added routine to calc deformations for mech redistribution...for the evp this is done for k=ndte in stress...here it is done once we have NL convergence

  

  JFLemieux73

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  9a54b28

• chnaged names of evp_prep1 to dyn_prep1...

  

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  14d4611

• in process of adding gmres as precond to fgmres...

  

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  5076124

• matvec is now done in one routine instead of in two steps before

  

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  71214b9

• in the process of adding gmres precond

  

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  da9a955

• finalizing implementation of gmres for precond

  

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  4b8a7c7

• pgmres seems to work...I used it as a solver and it works fine

  

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  76d30b7

• minor modif: introduction of maxits_pgmres

  

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  f536a9b

• modif to comments...very minor

  

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  441f849

• something was inconsistent for precond choice...now fixed and removed one precond option (free drift)

  

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  21364ec

• removed krelax...not needed as a more complex method will be added

  

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  f57e346

• in the process of adding the RRE1 acceleration method

  

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  c547d30

• fixed problem in halo update (spherical grid...wraps on itself) before matvec

  

  JFLemieux73

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  67ae918

• cicecore: add puny_dyn variable to initialize tinyarea, remove temporary punyVP variable

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  b3bc476

• ice_dyn_vp: move solver algorithm and output parameters to namelist

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  3ddca0e

• {f,}gmres: use nu_diag for output

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  596ae1e

• dynamics: correct 2 bugs found using debugging flags

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  a6ae6e5

• ice_dyn_vp: rename VP namelist variables to be more descriptive

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  5a77775

• pgmres: streamlined monitoring output

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  84f2973

• ice_dyn_vp: add computation of nonlinear and fixed point residuals

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  da38075

• ice_dyn_vp: remove references to RRE acceleration method

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  df8ff72

• ice_dyn_vp: remove unused 'ulin', 'vlin' variables

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  aca44ed

• ice_dyn_vp: move Picard iteration to separate subroutine

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  945dada

• ice_dyn_vp: add Anderson acceleration for Picard iteration

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• options: add options files for implicit solver

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  03a152e

• ice_dyn_vp: correct residual computations if max_blocks > 1

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  65c8012

• ice_dyn_vp: differentiate fixed point and progress residuals

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  7d2c6d4

• ice_dyn_vp: fix convergence issues in Picard and Anderson solvers

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  779cf43

• ice_dyn_vp: add (ulin,vlin) to compute vrel based on 2 previous iterates

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  57e096f

• machines: cesium: add LAPACK and BLAS library to Macros

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  4a96460

• ice_dyn_vp: add 'subname' variable to each subroutine

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  836e546

• ice_dyn_vp: cleanup 'icepack_warnings_*' calls

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  7640444

• ice_dyn_vp, pgmres: remove unused arguments, variables and 'use' statements variables

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  148668c

• ice_dyn_vp: refactor 'puny' treatment for implicit solver

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  6eb86cd

• ice_dyn_vp: make 'calc_bvec' use already computed 'vrel'

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  58fa7e8

• ice_dyn_vp: remove references to fgmres2 subroutine

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  b23a940

• dynamics: remove 'BLAS_routines.F90'

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• ice_dyn_vp: synchronize 'imp_solver' with ice_dyn_evp::evp

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  5848a50

• dynamics: refactor strain rates and deformation calculations

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• dynamics: add sol_fgmres2d from GEM as ice_krylov.F90 (does not compile)

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• ice_krylov: adapt FGMRES algo up to inner loop (WIP)

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• ice_krylov: adapt FGMRES algo up to preconditioner call (WIP)

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  b7460a2

• ice_krylov: adapt FGMRES algo up to before CGS (WIP)

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  a8e4ed2

• ice_krylov: adapt FGMRES algo up to end of Arnoldi (except 1st GS loop) (WIP)

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  a1d6d77

• ice_krylov: adapt FGMRES algo up to updating of solution (WIP)

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• ice_krylov: adapt FGMRES algo up to residual calculation (WIP)

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  5925c94

• ice_krylov: correct CICE kinds in function almost_zero

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  b6fa842

• comm: add 'global_sums' module procedure

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  af5adaa

• ice_krylov: adapt FGMRES including Gram-Schmidt (WIP)

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• ice_krylov: add 'pgmres' subroutine (mostly the same as 'fgmres')

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• ice_krylov: move subroutines to ice_dyn_vp to work around circular deps

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  be63b45

• ice_dyn_vp: add 'subname' to subroutine 'almost_zero' and correct indentation

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  17a290e

• ice_dyn_vp: add 'ice_HaloUpdate_vel' subroutine

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  9fd638d

• ice_dyn_vp: make 'fld2' a module variable

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  865a716

• ice_dyn_vp: move 'ice_halo' to module 'use' statement

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  93c0335

• ice_dyn_vp: add workspace initialization to 0 and haloupdate before matvec in fgmres (WIP)

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  282edf9

• ice_dyn_vp: add choice between classical and modified Gram-Schmidt orthogonalization

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  aaf9a89

• ice_dyn_vp: change order of arguments for 'precondition' subroutine

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  79749ad

• ice_dyn_vp: fgmres: correctly initialize workspace_[xy] and arnoldi_basis_[xy]

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  b6769e9

• ice_dyn_vp: matvec: change Au,Av from 'intent(out)' to 'intent(inout)'

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  9e0a27a

• ice_dyn_vp: clarify decriptions of FGMRES variables

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  1e35c9a

• ice_dyn_vp: add subroutines description and clarify existing ones

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  07c2b01

• ice_dyn_vp: fix comments in FGMRES algorithm

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• ice_dyn_vp: fgmres: fix misleading check for return

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  867318a

• ice_dyn_vp: fgmres: fix error in the last loop computing the residual

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  10fc1ea

• ice_dyn_vp: change the definition of F(x) from 'A.x - b' to 'b - A.x'

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• ice_dyn_vp: fgmres: comment out early return (WIP)

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• ice_dyn_vp: pgmres: synchronize with fgmres (WIP)

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  3ddc81c

• ice_dyn_vp: picard_solver: re-enable legacy solver

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  fc4fa1c

• cicecore: remove remaining 'SVN:$Id:' lines

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  71b463c

• ice_dyn_vp: remove 'picard_solver' subroutine

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  9877fd7

• ice_dyn_vp: remove legacy FGMRES solver

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• ice_dyn_vp: pgmres: use Classical Gram-Schmidt

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• ice_in: change maxits_{f,p}gmres to be in line with new meaning

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• ice_dyn_vp: uniformize naming of namelist parameters for solver tolerances

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• ice_dyn_vp: anderson_solver: adapt residual norm computations for MPI

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• ice_dyn_vp: write solver diagnostics only for master task

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• ice_dyn_vp: remove references to EVP

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• ice_dyn_vp: rename 'puny_vp' to 'min_strain_rate'

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• ice_dyn_vp: remove "signature" comments from JF

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  2baf569

• ice_dyn_vp: write stresses at end of time step

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  5ed406d

• ice_dyn_vp: cleanup 'intent's

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• dynamics: correct the definition of 'shearing strain rate' in comments

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• ice_dyn_vp: correctly use 'subname' in 'abort_ice' calls

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• ice_dyn_vp: add 'calc_seabed_stress' subroutine

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• dynamics: move basal stress residual velocity ('u0') to ice_dyn_shared

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• ice_dyn_vp: use 'deformations' from ice_dyn_shared

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• ice_dyn_vp: simplify 'calc_vrel_Cb' subroutine

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• ice_dyn_vp: rename 'Diag[uv]' to 'diag[xy]' for consistency

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• ice_dyn_vp: introduce 'CICE_USE_LAPACK' preprocessor macro

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  62ac6a4

• ice_dyn_vp: convert 'algo_nonlin' to string

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  6057ada

• ice_dyn_vp: convert 'precond' to string

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• ice_dyn_vp: convert 'monitor_{f,p}gmres' to logical

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• ice_dyn_vp: remove unimplemented 'fpfunc_andacc' from the namelist

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• ice_dyn_vp: add input validation for string namelist variables

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• ice_dyn_vp: abort if Anderson solver is used in parallel

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• ice_dyn_vp: reimplement monitor_{f,p}gmres

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• ice_dyn_vp: use 'ice_HaloUpdate_vel' everywhere

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• ice_dyn_vp: move ice_HaloUpdate_vel subroutine to ice_dyn_shared

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• ice_dyn_evp: use ice_HaloUpdate_vel

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• ice_dyn_eap: use ice_HaloUpdate_vel

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• options: set 'use_mean_vrel' in 'dynpicard'

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• conda: add 'libapack' to environment spec and Macros

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• ice_dyn_vp: initialize 'L2norm' and 'norm_squared' to zero

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• ice_dyn_vp: initialize 'stPr' and 'zetaD' to zero

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• doc: document implicit solver

  phil-blain

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  0986749

• ice_dyn_vp: default 'use_mean_vrel' to 'true'

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  committed
  37deff5

• ice_in: remove Anderson solver parameters

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  6029908

• ice_dyn_vp: add article references

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• ice_dyn_vp: remove unused subroutines

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  committed
  acc0627

• ice_dyn_vp: remove unused local variables

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• ice_dyn_vp: calc_bvec: remove unused arguments

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• ice_dyn_vp: anderson_solver: remove unused arguments

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  9cfa74b

• ice_dyn_vp: remove unused 'use'-imported variables in subroutines

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• ice_dyn_vp: fix trailing whitespace errors

  phil-blain

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  b060c37

• ice_dyn_vp: uniformize indentation and whitespace

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• ice_dyn_vp: put 'intent's on same lines as types

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• ice_dyn_vp: use '==' instead of '.eq.'

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• ice_dyn_vp: uniformize whitespace in subroutine arguments

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• ice_dyn_vp: calc_bvec: remove unneeded arguments

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• ice_dyn_vp: clean up and clarify code comments

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• ice_dyn_vp: matvec: remove unneeded local variable

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• ice_dyn_vp: rename 'stPrtmp' to 'stress_Pr' and 'Dstrtmp' to 'diag_rheo'

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  phil-blain

  committed
  892040a

• ice_dyn_vp: rename 'calc_zeta_Pr' to 'calc_zeta_dPr'

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  88db326

• ice_dyn_vp: rename 'ww[xy]' to 'orig_basis_[xy]'

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  235133d

• ice_dyn_vp: [fp]gmres: removed unused 'r0' variable and 'conv' argument

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• ice_dyn_vp: make 'maxits_nonlin' default to 4

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  ea840c7

• ice_dyn_vp: rename 'im_{fgmres,pgmres,andacc}' to 'dim_*'

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  294fe1d

• tests: add 'dynpicard' test to base_suite

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  bda247b

• dynamics: remove proprietary vector directives

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• ice_init: validate implicit solver arguments only if solver is active

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  13b3045

• ice_dyn_vp: rename 'imp_solver' to 'implicit_solver'

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  3c2c5c7

• doc: add caveat for VP solver (tx1 grid, threading)

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• ice_dyn_vp: rename 'CICE_USE_LAPACK' macro to 'USE_LAPACK'

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  9978267

• comm: rename 'global_sums' to 'global_allreduce_sum'

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• dynamics: remove 'ice_HaloUpdate_vel' and introduce '(un)stack_velocity_field'

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  3ba4a2e

Commits on Aug 26, 2020

• dynamics: rename 'init_evp' to 'init_dyn'

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  e96bdda

• drivers: call 'init_dyn' unconditionnally

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  committed
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