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* Advanced port of matlab code * Completed modelupdater for matlab experiment * completed pass one of matlab port mcmc * Working 2 isotope RJ MMC port from matlab * plotting progress * histogram plotting * tweaks * axis tics * fixed bug * completed demo of 2 isotope RJMCMC
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@@ -21,4 +21,5 @@ | |
| requires Tripoli.TripoliCore; | ||
| requires java.datatransfer; | ||
| requires java.desktop; | ||
| requires commons.bc38781605; | ||
| } | ||
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TripoliApp/src/main/java/org/cirdles/tripoli/gui/dataViews/plots/AbstractDataView.java
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| @@ -0,0 +1,267 @@ | ||
| /* | ||
| * AbstractRawDataView.java | ||
| * | ||
| * Created Jul 6, 2011 | ||
| * | ||
| * Copyright 2006 James F. Bowring and Earth-Time.org | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
| package org.cirdles.tripoli.gui.dataViews.plots; | ||
|
|
||
| import javafx.scene.canvas.Canvas; | ||
| import javafx.scene.canvas.GraphicsContext; | ||
| import javafx.scene.paint.Paint; | ||
| import javafx.scene.shape.Rectangle; | ||
| import java.math.BigDecimal; | ||
|
|
||
| /** | ||
| * @author James F. Bowring | ||
| */ | ||
| public abstract class AbstractDataView extends Canvas { | ||
| protected double x; | ||
| protected double y; | ||
| protected double width; | ||
| protected double height; | ||
| protected double[] yAxisData; | ||
| protected double[] xAxisData; | ||
| protected int graphWidth; | ||
| protected int graphHeight; | ||
| protected int topMargin = 0; | ||
| protected int leftMargin = 0; | ||
| protected double minX; | ||
| protected double maxX; | ||
| protected double minY; | ||
| protected double maxY; | ||
| protected BigDecimal[] ticsX; | ||
| protected BigDecimal[] ticsY; | ||
| protected BigDecimal[] ticsYII; | ||
| private double displayOffsetY = 0; | ||
| private double displayOffsetX = 0; | ||
|
|
||
| private AbstractDataView() { | ||
| super(); | ||
| } | ||
|
|
||
| /** | ||
| * @param bounds | ||
| */ | ||
| protected AbstractDataView(Rectangle bounds, int leftMargin, int topMargin) { | ||
| super(bounds.getWidth(), bounds.getHeight()); | ||
| x = bounds.getX(); | ||
| y = bounds.getY(); | ||
| this.leftMargin = leftMargin; | ||
| this.topMargin = topMargin; | ||
| this.yAxisData = null; | ||
| width = bounds.getWidth(); | ||
| height = bounds.getHeight(); | ||
| updateGraphSize(); | ||
|
|
||
| this.ticsY = null; | ||
| } | ||
|
|
||
| /** | ||
| * @param g2d | ||
| */ | ||
| protected void paintInit(GraphicsContext g2d) { | ||
| relocate(x, y); | ||
| g2d.clearRect(0, 0, width, height); | ||
| } | ||
|
|
||
| /** | ||
| * @param g2d | ||
| */ | ||
| public void paint(GraphicsContext g2d) { | ||
| paintInit(g2d); | ||
|
|
||
| drawBorder(g2d); | ||
| } | ||
|
|
||
| public void repaint() { | ||
| paint(this.getGraphicsContext2D()); | ||
| } | ||
|
|
||
| private void drawBorder(GraphicsContext g2d) { | ||
| // fill it in | ||
| g2d.setFill(Paint.valueOf("WHITE")); | ||
| g2d.fillRect(0, 0, width, height); | ||
|
|
||
| // draw border | ||
| g2d.setStroke(Paint.valueOf("BLACK")); | ||
| g2d.setLineWidth(1); | ||
| g2d.strokeRect(1, 1, width - 1, height - 1); | ||
|
|
||
| } | ||
|
|
||
| /** | ||
| * @param x | ||
| * @return mapped x | ||
| */ | ||
| public double mapX(double x) { | ||
| return (((x - getMinX_Display()) / getRangeX_Display()) * graphWidth) + leftMargin; | ||
| } | ||
|
|
||
| /** | ||
| * @param y | ||
| * @return mapped y | ||
| */ | ||
| protected double mapY(double y) { | ||
| return (((getMaxY_Display() - y) / getRangeY_Display()) * graphHeight) + topMargin; | ||
| } | ||
|
|
||
| /** | ||
| * @param doReScale the value of doReScale | ||
| * @param inLiveMode the value of inLiveMode | ||
| */ | ||
| public void refreshPanel(boolean doReScale, boolean inLiveMode) { | ||
| try { | ||
| preparePanel(); | ||
| repaint(); | ||
| } catch (Exception e) { | ||
| } | ||
| } | ||
|
|
||
| /** | ||
| * | ||
| */ | ||
| public abstract void preparePanel(); | ||
|
|
||
| /** | ||
| * @return the displayOffsetY | ||
| */ | ||
| public double getDisplayOffsetY() { | ||
| return displayOffsetY; | ||
| } | ||
|
|
||
| /** | ||
| * @param displayOffsetY the displayOffsetY to set | ||
| */ | ||
| public void setDisplayOffsetY(double displayOffsetY) { | ||
| this.displayOffsetY = displayOffsetY; | ||
| } | ||
|
|
||
| /** | ||
| * @return the displayOffsetX | ||
| */ | ||
| public double getDisplayOffsetX() { | ||
| return displayOffsetX; | ||
| } | ||
|
|
||
| /** | ||
| * @param displayOffsetX the displayOffsetX to set | ||
| */ | ||
| public void setDisplayOffsetX(double displayOffsetX) { | ||
| this.displayOffsetX = displayOffsetX; | ||
| } | ||
|
|
||
| /** | ||
| * @return minimum displayed x | ||
| */ | ||
| public double getMinX_Display() { | ||
| return minX + displayOffsetX; | ||
| } | ||
|
|
||
| /** | ||
| * @return maximum displayed x | ||
| */ | ||
| public double getMaxX_Display() { | ||
| return maxX + displayOffsetX; | ||
| } | ||
|
|
||
| /** | ||
| * @return minimum displayed y | ||
| */ | ||
| public double getMinY_Display() { | ||
| return minY + displayOffsetY; | ||
| } | ||
|
|
||
| /** | ||
| * @return maximum displayed y | ||
| */ | ||
| public double getMaxY_Display() { | ||
| return maxY + displayOffsetY; | ||
| } | ||
|
|
||
| /** | ||
| * @return | ||
| */ | ||
| public double getRangeX_Display() { | ||
| return (getMaxX_Display() - getMinX_Display()); | ||
| } | ||
|
|
||
| /** | ||
| * @return | ||
| */ | ||
| public double getRangeY_Display() { | ||
| return (getMaxY_Display() - getMinY_Display()); | ||
| } | ||
|
|
||
| /** | ||
| * @return the yAxisData | ||
| */ | ||
| public double[] getyAxisData() { | ||
| return yAxisData.clone(); | ||
| } | ||
|
|
||
| /** | ||
| * @return the xAxisData | ||
| */ | ||
| public double[] getxAxisData() { | ||
| return xAxisData.clone(); | ||
| } | ||
|
|
||
| /** | ||
| * @param x | ||
| * @return | ||
| */ | ||
| protected double convertMouseXToValue(double x) { | ||
| double convertedX = ((x - leftMargin + 2) / (double) graphWidth) // | ||
| * getRangeX_Display()// | ||
| + getMinX_Display(); | ||
|
|
||
| return convertedX; | ||
| } | ||
|
|
||
| /** | ||
| * @param y | ||
| * @return | ||
| */ | ||
| protected double convertMouseYToValue(double y) { | ||
| return -1 * (((y - topMargin - 1) * getRangeY_Display() / graphHeight) // | ||
| - getMaxY_Display()); | ||
| } | ||
|
|
||
| protected boolean mouseInHouse(javafx.scene.input.MouseEvent evt) { | ||
| return ((evt.getX() >= leftMargin) | ||
| && (evt.getY() >= topMargin) | ||
| && (evt.getY() < graphHeight + topMargin - 2) | ||
| && (evt.getX() < (graphWidth + leftMargin - 2))); | ||
| } | ||
|
|
||
| public void updateGraphSize(){ | ||
| this.graphWidth = (int) (width - 2 * leftMargin); | ||
| this.graphHeight = (int) (height - 2 * topMargin); | ||
| } | ||
|
|
||
| public void setMyWidth(double width) { | ||
| this.width = width; | ||
| setWidth(width); | ||
| updateGraphSize(); | ||
| } | ||
|
|
||
| public void setMyHeight(double height) { | ||
| this.height = height; | ||
| setHeight(height); | ||
| updateGraphSize(); | ||
| } | ||
| } |
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