cibridge-example-workflow

An example repository showing how to use CIBridge and Sci2 algorithms using Python

Building Instructions

1. Visit this repository https://github.com/CIShell/cishell-cibridge and follow the build instructions and running container instructions to run the CIBridge GraphQL server.
2. Use the Sci2Container to access the algorithms from Sci2 algorithms.

Steps to run the script

1. Install the following dependencies using pip.

pip install requests
pip install py-graphql-client

2. Run the isi_worklow.py file by passing the input isi file, the output path with filename for the authors.csv and the third optional argument output path with filename for the nodes.csv.

Examples:

1. isi_workflow.py xxxx/FourNetSciResearchers.isi authors.csv nodes.csv
2. isi_workflow.py xxxx/FourNetSciResearchers.isi authors.csv

For the above example you will get the output in the same folder with names authors.csv and nodes.csv