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fix initialization from sparse arrays #477

fix initialization from sparse arrays

fix initialization from sparse arrays #477

Workflow file for this run

name: CMake
on: [push]
env:
# Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
BUILD_TYPE: Release
jobs:
build:
strategy:
matrix:
#os: [ubuntu-18.04, ubuntu-20.04, macOS-latest]
os: [ubuntu-20.04]
runs-on: ${{ matrix.os}}
steps:
- uses: actions/checkout@v3
- name: Install OS Dependencies
shell: bash
run: |
if [ `echo ${{matrix.os}} | cut -d - -f 1` = "ubuntu" ]; then
sudo apt-get --allow-releaseinfo-change update -y
[ `echo ${{matrix.os}} | cut -d . -f 1` = "ubuntu-20" ] && sudo apt-get install python-is-python3
sudo apt-get install libbz2-dev libboost-all-dev libflac-dev libnetcdf-dev python python3 python3-pip python3-setuptools
elif [ `echo ${{matrix.os}} | cut -d - -f 1` = "macOS" ]; then
brew install python@3.10
brew link --overwrite python@3.10
brew install bzip2 boost boost-python3 flac netcdf
else
echo 'No installed package manager!'
exit 1
fi
- name: Install Python Packages
run: |
pip3 install numpy scipy matplotlib astropy healpy sphinx
- name: Create Build Environment
# Some projects don't allow in-source building, so create a separate build directory
# We'll use this as our working directory for all subsequent commands
run: cmake -E make_directory ${{runner.workspace}}/build
- name: Configure CMake
# Use a bash shell so we can use the same syntax for environment variable
# access regardless of the host operating system
shell: bash
working-directory: ${{runner.workspace}}/build
# Note the current convention is to use the -S and -B options here to specify source
# and build directories, but this is only available with CMake 3.13 and higher.
# The CMake binaries on the Github Actions machines are (as of this writing) 3.12
run: cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=$BUILD_TYPE
- name: Build
working-directory: ${{runner.workspace}}/build
shell: bash
# Execute the build. You can specify a specific target with "--target <NAME>"
run: cmake --build . --config $BUILD_TYPE
- name: Test
working-directory: ${{runner.workspace}}/build
shell: bash
# Execute tests defined by the CMake configuration.
# See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail
run: ./env-shell.sh ctest -C $BUILD_TYPE --output-on-failure
- name: Docs
if: github.ref_name == 'master' && startsWith(matrix.os, 'ubuntu')
working-directory: ${{runner.workspace}}/build
shell: bash
# Build docs
run: ./env-shell.sh cmake --build . --config $BUILD_TYPE --target docs
- name: Checkout gh_pages
if: github.ref_name == 'master' && startsWith(matrix.os, 'ubuntu')
uses: actions/checkout@v3
with:
ref: gh-pages
path: gh-pages
- name: Commit docs
if: github.ref_name == 'master' && startsWith(matrix.os, 'ubuntu')
shell: bash
run: |
cp -r ${{runner.workspace}}/build/docs/* gh-pages/
cd gh-pages
touch .nojekyll
git config --local user.name github-actions[bot]
git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"
git add .
git commit -m "Update documentation" -a || true
git push