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chore(deps): bump the dependencies group across 1 directory with 6 updates #256

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@dependabot dependabot bot commented on behalf of github Jan 13, 2025

Bumps the dependencies group with 6 updates in the / directory:

Package From To
fhir-resources 7.1.0 8.0.0
sqlalchemy 2.0.36 2.0.37
pydantic 2.10.3 2.10.5
pydantic-settings 2.7.0 2.7.1
numpy 2.2.0 2.2.1
setuptools 75.6.0 75.8.0

Updates fhir-resources from 7.1.0 to 8.0.0

Changelog

Sourced from fhir-resources's changelog.

8.0.0 (2024-12-25)

  • The minimum required version for fhir-core is 1.0.0, which obviously comes with new features and bug fixes. For example xml serialization/deserialization. See changes log here <https://github.com/nazrulworld/fhir-core/blob/1.0.0/HISTORY.rst#100-2024-12-25>_

  • Issue #168 nazrulworld/fhir.resources#166

8.0.0b4 (2024-10-24)

  • PR#160 <https://github.com/nazrulworld/fhir.resources/pull/160>_ switch the type of Element.id from id to string for R4B [cybernop]

8.0.0b3 (2024-10-10)

  • Minimum version of fhir-core package have been updated.
  • All of fhir resources are regenerated for to comply with the optionality of fhir model's field. Issue nazrulworld/fhir.resources#164

8.0.0b2 (2024-10-02)

  • Issue [#164](https://github.com/nazrulworld/fhir.resources/issues/164) <https://github.com/nazrulworld/fhir.resources/issues/164>_ get_fhir_model_class is now available and can be imported from base package. For example from fhir.resources import get_fhir_model_class or from fhir.resources.STU3 import get_fhir_model_class

8.0.0b1 (2024-08-05)

Breaking

  • Drop support for python 3.7

  • FHIR DTU2 packages are no longer available.

Commits
  • 2de36c7 Preparing release 8.0.0
  • 1115f8b ✨ setup py has been updated, including Manifest file.
  • fa483dc ✨ The minimum required version for fhir-core is 1.0.0
  • e2c8ca4 📝 updated readme
  • c5a8e5f Back to development: 8.0.0b5
  • 0380993 Preparing release 8.0.0b4
  • eeafae8 ✨ minimum fhir-core version requirement has been updated.
  • bd1b754 📝 documents are updater for PR #160
  • cb5b4c8 Merge pull request #160 from cybernop/fix/element-id
  • a309dff switch the type of Element.id from id to string for R4B
  • Additional commits viewable in compare view

Updates sqlalchemy from 2.0.36 to 2.0.37

Release notes

Sourced from sqlalchemy's releases.

2.0.37

Released: January 9, 2025

orm

  • [orm] [bug] Fixed issue regarding Union types that would be present in the _orm.registry.type_annotation_map of a _orm.registry or declarative base class, where a Mapped element that included one of the subtypes present in that Union would be matched to that entry, potentially ignoring other entries that matched exactly. The correct behavior now takes place such that an entry should only match in _orm.registry.type_annotation_map exactly, as a Union type is a self-contained type. For example, an attribute with Mapped[float] would previously match to a _orm.registry.type_annotation_map entry Union[float, Decimal]; this will no longer match and will now only match to an entry that states float. Pull request courtesy Frazer McLean.

    References: #11370

  • [orm] [bug] Fixed bug in how type unions were handled within _orm.registry.type_annotation_map as well as _orm.Mapped that made the lookup behavior of a | b different from that of Union[a, b].

    References: #11944

  • [orm] [bug] Consistently handle TypeAliasType (defined in PEP 695) obtained with the type X = int syntax introduced in python 3.12. Now in all cases one such alias must be explicitly added to the type map for it to be usable inside Mapped. This change also revises the approach added in #11305, now requiring the TypeAliasType to be added to the type map. Documentation on how unions and type alias types are handled by SQLAlchemy has been added in the orm_declarative_mapped_column_type_map section of the documentation.

    References: #11955

  • [orm] [bug] Fixed regression caused by an internal code change in response to recent Mypy releases that caused the very unusual case of a list of ORM-mapped attribute expressions passed to ColumnOperators.in_() to no longer be accepted.

    References: #12019

  • [orm] [bug] Fixed issues in type handling within the _orm.registry.type_annotation_map feature which prevented the use of unions, using either pep-604 or Union syntaxes under future

... (truncated)

Commits

Updates pydantic from 2.10.3 to 2.10.5

Release notes

Sourced from pydantic's releases.

v2.10.5 2024-12-18

v2.10.5 (2025-01-08)

What's Changed

v2.10.4 2024-12-18

What's Changed

Packaging

Fixes

New Contributors

Full Changelog: pydantic/pydantic@v2.10.3...v2.10.4

Changelog

Sourced from pydantic's changelog.

v2.10.5 (2025-01-08)

GitHub release

What's Changed

v2.10.4 (2024-12-18)

GitHub release

What's Changed

Packaging

Fixes

New Contributors

Commits

Updates pydantic-settings from 2.7.0 to 2.7.1

Release notes

Sourced from pydantic-settings's releases.

v2.7.1

What's Changed

Full Changelog: pydantic/pydantic-settings@v2.7.0...v2.7.1

Commits

Updates numpy from 2.2.0 to 2.2.1

Release notes

Sourced from numpy's releases.

2.2.1 (DEC 21, 2024)

NumPy 2.2.1 Release Notes

NumPy 2.2.1 is a patch release following 2.2.0. It fixes bugs found after the 2.2.0 release and has several maintenance pins to work around upstream changes.

There was some breakage in downstream projects following the 2.2.0 release due to updates to NumPy typing. Because of problems due to MyPy defects, we recommend using basedpyright for type checking, it can be installed from PyPI. The Pylance extension for Visual Studio Code is also based on Pyright. Problems that persist when using basedpyright should be reported as issues on the NumPy github site.

This release supports Python 3.10-3.13.

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Joren Hammudoglu
  • Matti Picus
  • Nathan Goldbaum
  • Peter Hawkins
  • Simon Altrogge
  • Thomas A Caswell
  • Warren Weckesser
  • Yang Wang +

Pull requests merged

A total of 12 pull requests were merged for this release.

  • #27935: MAINT: Prepare 2.2.x for further development
  • #27950: TEST: cleanups
  • #27958: BUG: fix use-after-free error in npy_hashtable.cpp (#27955)
  • #27959: BLD: add missing include
  • #27982: BUG:fix compile error libatomic link test to meson.build
  • #27990: TYP: Fix falsely rejected value types in ndarray.__setitem__
  • #27991: MAINT: Don't wrap #include <Python.h> with extern "C"
  • #27993: BUG: Fix segfault in stringdtype lexsort
  • #28006: MAINT: random: Tweak module code in mtrand.pyx to fix a Cython...
  • #28007: BUG: Cython API was missing NPY_UINTP.
  • #28021: CI: pin scipy-doctest to 1.5.1
  • #28044: TYP: allow None in operand sequence of nditer

Checksums

... (truncated)

Commits
  • 7469245 Merge pull request #28047 from charris/prepare-2.2.1
  • acb051e REL: Prepare for the NumPy 2.2.1 release [wheel build]
  • 28a091a Merge pull request #28044 from charris/backport-28039
  • 723605b TST: Add test for allowing None in operand sequence passed to nditer
  • 554739e TYP: allow None in operand sequence of nditer
  • 31bc4c8 Merge pull request #28021 from charris/backport-28020
  • 32f52a3 CI: pin scipy-doctest to 1.5.1 (#28020)
  • 6219aeb Merge pull request #28007 from charris/backport-28005
  • eb7071c Merge pull request #28006 from charris/backport-28003
  • 4f82c32 BUG: Cython API was missing NPY_UINTP.
  • Additional commits viewable in compare view

Updates setuptools from 75.6.0 to 75.8.0

Changelog

Sourced from setuptools's changelog.

v75.8.0

Features

  • Implemented Dynamic field for core metadata (as introduced in PEP 643). The existing implementation is currently experimental and the exact approach may change in future releases. (#4698)

v75.7.0

Features

Commits
  • 5c9d980 Bump version: 75.7.0 → 75.8.0
  • 72c4222 Avoid using Any in function
  • 1c61d47 Add news fragments for PEP 643
  • f285d01 Implement PEP 643 (Dynamic field for core metadata) (#4698)
  • a50f6e2 Fix _static.Dict.ior for Python 3.8
  • b055895 Add extra tests for static/dynamic metadata
  • 770b4fc Remove test workaround for unmarked static values from pyproject.toml
  • 8b22d73 Mark values from pyproject.toml as static
  • f699fd8 Fix spelling error
  • 8b4c8a3 Add tests for static 'attr' directive
  • Additional commits viewable in compare view

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…dates

Bumps the dependencies group with 6 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [fhir-resources](https://github.com/nazrulworld/fhir.resources) | `7.1.0` | `8.0.0` |
| [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) | `2.0.36` | `2.0.37` |
| [pydantic](https://github.com/pydantic/pydantic) | `2.10.3` | `2.10.5` |
| [pydantic-settings](https://github.com/pydantic/pydantic-settings) | `2.7.0` | `2.7.1` |
| [numpy](https://github.com/numpy/numpy) | `2.2.0` | `2.2.1` |
| [setuptools](https://github.com/pypa/setuptools) | `75.6.0` | `75.8.0` |



Updates `fhir-resources` from 7.1.0 to 8.0.0
- [Release notes](https://github.com/nazrulworld/fhir.resources/releases)
- [Changelog](https://github.com/nazrulworld/fhir.resources/blob/main/HISTORY.rst)
- [Commits](nazrulworld/fhir.resources@7.1.0...8.0.0)

Updates `sqlalchemy` from 2.0.36 to 2.0.37
- [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases)
- [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst)
- [Commits](https://github.com/sqlalchemy/sqlalchemy/commits)

Updates `pydantic` from 2.10.3 to 2.10.5
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.10.3...v2.10.5)

Updates `pydantic-settings` from 2.7.0 to 2.7.1
- [Release notes](https://github.com/pydantic/pydantic-settings/releases)
- [Commits](pydantic/pydantic-settings@v2.7.0...v2.7.1)

Updates `numpy` from 2.2.0 to 2.2.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.2.0...v2.2.1)

Updates `setuptools` from 75.6.0 to 75.8.0
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](pypa/setuptools@v75.6.0...v75.8.0)

---
updated-dependencies:
- dependency-name: fhir-resources
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: dependencies
- dependency-name: sqlalchemy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: pydantic
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: pydantic-settings
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: setuptools
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jan 13, 2025
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dependabot bot commented on behalf of github Jan 20, 2025

Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot bot closed this Jan 20, 2025
@dependabot dependabot bot deleted the dependabot/pip/main/dependencies-1ed2f73bbc branch January 20, 2025 20:44
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