Discussions

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  Convert BAM file to UMI matrix

  yuw444 asked Oct 24, 2024 in Ideas · Unanswered

  

  

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  Building a splici index for two different read lengths

  lawsonvt asked Jun 14, 2022 in Q&A · Answered

  

  

  

  

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  How to make alevin-fry --expect cells to be better at guessing the number of cells?

  ljudevitluka asked Jan 31, 2023 in Q&A · Unanswered

  

  

  

  

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  RAD Files and Mixed Species experiment.

  AndreaMariani-AM asked Aug 29, 2023 in Q&A · Unanswered

  

  

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  Proposal for new simpleafR package — loading and *basic* pre-processing of alevin-fry output in R

  rob-p asked Jun 30, 2023 in Ideas · Unanswered

  

  

  

  

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  What are recommended gene annotation source & preprocessing steps?

  tomsing1 asked Nov 3, 2022 in Q&A · Unanswered

  

  

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  Can alevin-fry be used for data from the BC Rhapsody?

  stela2502 asked Sep 22, 2022 in Ideas · Unanswered

  

  

  

  

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  Receiving error in collate command using alevin-fry 0.6.0 (possibly lower).

  rob-p asked Aug 2, 2022 in Q&A · Unanswered

  

  

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  How to discern which sample a cell came from?

  lawsonvt asked Jun 8, 2022 in Q&A · Answered

  

  

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  #️⃣

  Improving and centralizing documentation

  rob-p asked May 10, 2022 in General · Unanswered

  

  

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  using alevin-fry in Nextflow pipeline nf-core/scrnaseq?

  Khajidu asked May 5, 2022 in Q&A · Unanswered

  

  

  

  

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  sparse vs. dense index

  rob-p asked Jan 23, 2022 in Q&A · Answered

  

  

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  Will alevin-fry support custom library structure?

  diyang1354 asked Mar 2, 2022 in Q&A · Answered

  

  

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  Welcome to alevin-fry Discussions!

  rob-p asked Jan 23, 2022 in Q&A · Unanswered

  

  

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