Search results

Is VDJ analysis possible w/ simpleaf?

Status: Open.

#182 In COMBINE-lab/simpleaf;

· DrSunsation opened on Jul 3, 2025

Further info on simpleaf index on HPCs

Status: Open.

#181 In COMBINE-lab/simpleaf;

· wmacnair opened on Mar 20, 2025

how to do with complex barcodes or multi linked barcode

Status: Open.

#176 In COMBINE-lab/simpleaf;

· d-jch opened on Jan 10, 2025

simpleaf index: runtime expectations

Status: Open.

#166 In COMBINE-lab/simpleaf;

· kevinrue opened on Nov 19, 2024

run simpleaf with a different umi length (here 9) | add-chemistry successfully

Status: Open.

#164 In COMBINE-lab/simpleaf;

· robertzeibich opened on Nov 11, 2024

simpleaf index error piscem index failed to build succesfully ExitStatus(unix_wait_status(6))

Status: Open.

#163 In COMBINE-lab/simpleaf;

· lichtobergo opened on Nov 4, 2024

[feature request] umi-edit-dist parameter

Status: Open.

#160 In COMBINE-lab/simpleaf;

· TavorB opened on Oct 17, 2024

[feature request] 10x chemistry autodetection

enhancementNew feature or requestNew feature or request

feature

Status: Open.

#158 In COMBINE-lab/simpleaf;

· rob-p opened on Aug 8, 2024

Error: invalid base: 0067

Status: Open.

#137 In COMBINE-lab/simpleaf;

· holmrenser opened on Jun 4, 2024

[question]: maximum available parallelism and number of threads

Status: Open.

#135 In COMBINE-lab/simpleaf;

· tamuanand opened on Apr 1, 2024

10x genomics FFPE chemistry

Status: Open.

#131 In COMBINE-lab/simpleaf;

· wangjiawen2013 opened on Feb 2, 2024

Cell-by-isoform matrix

Status: Open.

#115 In COMBINE-lab/simpleaf;

· sameer-aryal opened on Oct 25, 2023