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01deg jra55v140 iaf cycle4 #13

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merged 4 commits into from
Nov 11, 2021
Merged

01deg jra55v140 iaf cycle4 #13

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fa8280e
modify to enable BGC runs for Cycle 4. Next step is to set up restart…
Nov 9, 2021
d32c20d
document bgc initial conditions.
Nov 10, 2021
d658de2
disable brine tracer for now.
Nov 10, 2021
21937f7
Merge branch '01deg_jra55v140_iaf_cycle4' of https://github.com/COSIM…
Nov 11, 2021
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6 changes: 3 additions & 3 deletions ice/cice_in.nml
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Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@
tr_bgc_dmspd_sk = .false.
tr_bgc_dmspp_sk = .false.
tr_bgc_sil_sk = .false.
tr_brine = .true.
tr_brine = .false.
/

&forcing_nml
Expand Down Expand Up @@ -346,7 +346,7 @@
f_btin = 'x'
f_faero_atm = 'x'
f_faero_ocn = 'x'
f_fbri = 'm'
f_fbri = 'x'
f_fn = 'x'
f_fn_ai = 'm'
f_fnh = 'x'
Expand All @@ -356,7 +356,7 @@
f_fsil = 'x'
f_fsil_ai = 'x'
f_grownet = 'x'
f_hbri = 'm'
f_hbri = 'x'
f_ppnet = 'm'
/

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1 change: 0 additions & 1 deletion metadata.yaml
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Expand Up @@ -36,4 +36,3 @@ keywords:
- jra55-do-v1.4.0
- iaf
- bgc

24 changes: 6 additions & 18 deletions ocean/diag_table
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Expand Up @@ -422,26 +422,8 @@ ACCESS-OM2-01
"ocean_model", "zoo", "zoo", "oceanbgc-3d-zoo-1-monthly-mean-y%4yr", "all", "average", "none", 2


# monthly 3d diagnostic BGC fields

"oceanbgc-3d-npp3d-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "npp3d", "npp3d", "oceanbgc-3d-npp3d-1-monthly-mean-y%4yr", "all", "average", "none", 2

"oceanbgc-3d-pprod_gross-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "pprod_gross", "pprod_gross", "oceanbgc-3d-pprod_gross-1-monthly-mean-y%4yr", "all", "average", "none", 2

"oceanbgc-3d-radbio3d-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "radbio3d", "radbio3d", "oceanbgc-3d-radbio3d-1-monthly-mean-y%4yr", "all", "average", "none", 2


# monthly 2d diagnostic BGC fields

"oceanbgc-2d-paco2-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "paco2", "paco2", "oceanbgc-2d-paco2-1-monthly-mean-y%4yr", "all", "average", "none", 2

"oceanbgc-2d-pco2-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "pco2", "pco2", "oceanbgc-2d-pco2-1-monthly-mean-y%4yr", "all", "average", "none", 2

"oceanbgc-2d-stf03-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "stf03", "stf03", "oceanbgc-2d-stf03-1-monthly-mean-y%4yr", "all", "average", "none", 2

Expand All @@ -454,6 +436,12 @@ ACCESS-OM2-01
"oceanbgc-2d-wdet100-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "wdet100", "wdet100", "oceanbgc-2d-wdet100-1-monthly-mean-y%4yr", "all", "average", "none", 2

"oceanbgc-2d-npp2d-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "npp2d", "npp2d", "oceanbgc-2d-npp2d-1-monthly-mean-y%4yr", "all", "average", "none", 2

"oceanbgc-2d-pprod_gross_2d-1-monthly-mean-y%4yr", 1, "months", 1, "days", "time", 1, "months"
"ocean_model", "pprod_gross_2d", "pprod_gross_2d", "oceanbgc-2d-pprod_gross_2d-1-monthly-mean-y%4yr", "all", "average", "none", 2


# monthly scalar BGC timeseries snapshots

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17 changes: 3 additions & 14 deletions ocean/diag_table_source.yaml
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Expand Up @@ -406,17 +406,6 @@ diag_table:
o2:
phy:
zoo:
'monthly 3d diagnostic BGC fields':
defaults: # these can be overridden for individual fields below
file_name_prefix: oceanbgc
file_name_dimension: 3d # descriptor for filename, e.g. 3d, 2d, scalar
output_freq: 1 # integer: output sampling frequency in output_freq_units (0: every timestep; -1: only at end of run)
output_freq_units: months # time units for output: years, months, days, hours, minutes, or seconds
file_name_date: "y%4yr" # run date/time of file opening; format: %, 1 digit (#digits), one of (yr, mo, dy, hr, mi, sc); date/time components will be separated by _ in filename.
fields:
npp3d:
pprod_gross:
radbio3d:
'monthly 2d diagnostic BGC fields':
defaults: # these can be overridden for individual fields below
file_name_prefix: oceanbgc
Expand All @@ -425,12 +414,12 @@ diag_table:
output_freq_units: months # time units for output: years, months, days, hours, minutes, or seconds
file_name_date: "y%4yr" # run date/time of file opening; format: %, 1 digit (#digits), one of (yr, mo, dy, hr, mi, sc); date/time components will be separated by _ in filename.
fields:
paco2:
pco2:
stf03: # o2 air-to-sea flux
stf07: # dic air-to-sea flux
stf09: # adic air-to-sea flux
wdet100:
wdet100:
npp2d:
pprod_gross_2d:
'monthly scalar BGC timeseries snapshots': # snapshots of global integrals give better parallel performance
defaults: # these can be overridden for individual fields below
file_name_prefix: oceanbgc
Expand Down