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Question about --no-default-filter being automatically applied in lofreq call-parallel

Status: Open.

#153 In CSB5/lofreq;

· YangJingqii opened on May 28, 2025

Tag a release?

Status: Open.

#152 In CSB5/lofreq;

· schorlton-bugseq opened on Mar 1, 2025

Indel filtering using default filter at the last step failed

Status: Open.

#151 In CSB5/lofreq;

· masterrite opened on Feb 27, 2025

Unexpected Discrepancy in iSNV Detection Between Workflows With and Without Kraken2 Filtering

Status: Open.

#150 In CSB5/lofreq;

· YangJingqii opened on Jan 10, 2025

Does threading not work nicely with Somatic caller?

Status: Open.

#149 In CSB5/lofreq;

· cappuchinese opened on Dec 2, 2024

How does LoFreq automatically adapt to changes in coverage?

Status: Open.

#148 In CSB5/lofreq;

· LiuH2020 opened on Nov 19, 2024

Are there any suggested set of hard filters on lofreq indel file

Status: Open.

#145 In CSB5/lofreq;

· tanu06 opened on Oct 25, 2024

Lofreq viterbi

Status: Open.

#144 In CSB5/lofreq;

· rahil19 opened on Apr 26, 2024

Lofreq vcfplot - python version 3 support

Status: Open.

#143 In CSB5/lofreq;

· saradunaj opened on Feb 26, 2024

What are the stringent outputs and why do I have different calling results?

Status: Open.

#142 In CSB5/lofreq;

· ginnyintifa opened on Feb 2, 2024

IndexError: list index out of range

Status: Open.

#140 In CSB5/lofreq;

· min0609 opened on Oct 18, 2023

HTSLIB Variable

Status: Open.

#138 In CSB5/lofreq;

· mkadlof opened on Oct 16, 2023