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CU Anschutz BDC Github account

Hi 👋 thanks for visiting the BDC github account. This account is used by members of the Barbara Davis Diabetes Center at the University of Colorado Anschutz Medical Campus. This repository contains code associated with the papers published by faculy and trainees at the BDC. We also have general resources, like pipelines, tutorials, and packages that can be used by the greater community. All of the resources are under active development. Feel free to browse and reach out to Kristen (kristen.wells-wrasman [at] cuanschutz.edu) if you have any questions or concerns.

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  1. snakemake_pipelines snakemake_pipelines Public

    A collection of snakemake pipelines to analyze various data types. This is under active development.

    R 2 1

  2. scAnalysisR scAnalysisR Public

    A package to analyze single cell data in R. This package is under active development.

    R

Repositories

Showing 10 of 11 repositories
  • docker_singularity_recipes Public

    A collection of docker and singularity recipes for informatic analysis

    CUAnschutzBDC/docker_singularity_recipes’s past year of commit activity
    C 0 0 0 0 Updated Dec 3, 2024
  • slurm_snakemake Public

    Resources necessary to submit a snakejob on alpine

    CUAnschutzBDC/slurm_snakemake’s past year of commit activity
    R 0 0 0 0 Updated Nov 12, 2024
  • snakemake_pipelines Public

    A collection of snakemake pipelines to analyze various data types. This is under active development.

    CUAnschutzBDC/snakemake_pipelines’s past year of commit activity
    R 2 MIT 1 1 0 Updated Nov 12, 2024
  • scAnalysisR Public

    A package to analyze single cell data in R. This package is under active development.

    CUAnschutzBDC/scAnalysisR’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 16, 2024
  • Tutorials Public

    Tutorials for the BDC

    CUAnschutzBDC/Tutorials’s past year of commit activity
    Shell 2 0 0 0 Updated Apr 15, 2024
  • alpine_guide Public

    A guide for using the alpine server at the University of Colorado

    CUAnschutzBDC/alpine_guide’s past year of commit activity
    Shell 3 0 0 0 Updated Mar 16, 2024
  • RBFOX2_project Public

    Analysis pipeline and original code for RBFOX2 project - RNA-Seq and eCLIP-Seq.

    CUAnschutzBDC/RBFOX2_project’s past year of commit activity
    R 1 0 0 0 Updated Sep 11, 2023
  • Smith_210825_b_cell_analysis Public

    Analysis of human B cells for Mia Smith, Catherine Nicolas, and Zach Stensland

    CUAnschutzBDC/Smith_210825_b_cell_analysis’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 10, 2023
  • .github Public
    CUAnschutzBDC/.github’s past year of commit activity
    0 0 0 0 Updated Sep 14, 2022
  • Smith2022-CyTOF-analysis-CytoTree Public

    Script used for analyzing mass cytometry data using CytoTree (https://github.com/JhuangLab/CytoTree)

    CUAnschutzBDC/Smith2022-CyTOF-analysis-CytoTree’s past year of commit activity
    R 0 0 0 0 Updated Jul 18, 2022

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