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@CellTrackingChallenge

CTC

A collection of open source code related to the cell/nucleus segmentation and tracking, motivated by the Cell Tracking Challenge.
README.md

Welcome!

You can find here resources relevant to the Cell Tracking Challenge, in particular:

This site is maintained by Vladimir Ulman on behalf of the Organizers

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  1. fiji-plugins fiji-plugins Public

    Front-end Fiji plugins that make accessible the CTC measures.

    Java 1

  2. java-ctcmetrics java-ctcmetrics Public

    Java implementation of measures for quantitative evaluation of biomedical tracking in general.

    Java 2 1

  3. 2021-edition-available-colabs 2021-edition-available-colabs Public

    Colab Notebooks implementing training and inference for the methods of several contestants participating in the 2021 CTC edition, in order to fulfill the reusability criteria

    Jupyter Notebook 6 1

  4. py-ctcmetrics py-ctcmetrics Public

    Cell Tracking metrics and tools for the CellTrackingChallenge as described in 'CHOTA: A Higher Order Accuracy Metric for Cell Tracking'

    Python 9

  5. label-fusion-ng label-fusion-ng Public

    Generalized Fiji Tool for Automatic Fusion of Segmentation and Tracking Labels

    Java

  6. mastodon-ctc mastodon-ctc Public

    Forked from mastodon-sc/mastodon-ctc

    Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format

    Java

Repositories

Showing 9 of 9 repositories
  • py-ctcmetrics Public

    Cell Tracking metrics and tools for the CellTrackingChallenge as described in 'CHOTA: A Higher Order Accuracy Metric for Cell Tracking'

    CellTrackingChallenge/py-ctcmetrics’s past year of commit activity
    Python 9 BSD-2-Clause 0 0 0 Updated Aug 22, 2024
  • .github Public

    Utility repo to maintain this github organization's entry README page

    CellTrackingChallenge/.github’s past year of commit activity
    0 BSD-2-Clause 0 0 0 Updated Aug 21, 2024
  • java-ctcmetrics Public

    Java implementation of measures for quantitative evaluation of biomedical tracking in general.

    CellTrackingChallenge/java-ctcmetrics’s past year of commit activity
    Java 2 BSD-2-Clause 1 8 0 Updated Aug 21, 2024
  • mastodon-ctc Public Forked from mastodon-sc/mastodon-ctc

    Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format

    CellTrackingChallenge/mastodon-ctc’s past year of commit activity
    Java 0 BSD-2-Clause 3 0 0 Updated May 15, 2024
  • label-fusion-ng Public

    Generalized Fiji Tool for Automatic Fusion of Segmentation and Tracking Labels

    CellTrackingChallenge/label-fusion-ng’s past year of commit activity
    Java 0 BSD-2-Clause 0 4 0 Updated Apr 5, 2024
  • fiji-plugins Public

    Front-end Fiji plugins that make accessible the CTC measures.

    CellTrackingChallenge/fiji-plugins’s past year of commit activity
    Java 1 BSD-2-Clause 0 0 0 Updated Nov 22, 2023
  • 2021-edition-available-colabs Public

    Colab Notebooks implementing training and inference for the methods of several contestants participating in the 2021 CTC edition, in order to fulfill the reusability criteria

    CellTrackingChallenge/2021-edition-available-colabs’s past year of commit activity
    Jupyter Notebook 6 MIT 1 1 0 Updated Sep 28, 2022
  • label-fusion-BIC Public archive

    A Fiji Tool for Automatic Fusion of Segmentation and Tracking Labels

    CellTrackingChallenge/label-fusion-BIC’s past year of commit activity
    Java 0 BSD-2-Clause 0 0 0 Updated Jan 11, 2022
  • CTC-FijiPlugins Public archive

    [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.

    CellTrackingChallenge/CTC-FijiPlugins’s past year of commit activity
    Java 10 5 10 0 Updated Jan 11, 2022

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