Merge pull request #4 from weaversd/documentationReorganization

reorganized documentation folder
Champion-Lab · Nov 15, 2022 · 2dc69a4 · 2dc69a4
2 parents 474b6b5 + 73fdb73
commit 2dc69a4
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diff --git a/www/Champion_lab_v1.png → Documentation/Champion_lab_v1.png b/www/Champion_lab_v1.png → Documentation/Champion_lab_v1.png
diff --git a/www/Display_origin_peptides_example.png → ...ation/Display_origin_peptides_example.png b/www/Display_origin_peptides_example.png → ...ation/Display_origin_peptides_example.png
diff --git a/www/Documentation.html → Documentation/Documentation.html b/www/Documentation.html → Documentation/Documentation.html
diff --git a/www/Documentation.md → Documentation/Documentation.md b/www/Documentation.md → Documentation/Documentation.md
@@ -151,4 +151,4 @@ Please leave all of the above on the [github page](https://github.com/Champion-L
 <img src="Champion_lab_v1.png" alt="drawing" width="200"/>  
 [Champion Lab](https://championlab.weebly.com/), University of Notre Dame  
 
-<sup>By Simon D. Weaver and Christine M. DeRosa</sup>
+<sup>By Simon D. Weaver and Christine M. DeRosa</sup>
diff --git a/www/PEAKS_download_screenshot.png → Documentation/PEAKS_download_screenshot.png b/www/PEAKS_download_screenshot.png → Documentation/PEAKS_download_screenshot.png
diff --git a/www/PTMs_1.png → Documentation/PTMs_1.png b/www/PTMs_1.png → Documentation/PTMs_1.png
diff --git a/www/PTMs_2.png → Documentation/PTMs_2.png b/www/PTMs_2.png → Documentation/PTMs_2.png
diff --git a/www/PTMs_3.png → Documentation/PTMs_3.png b/www/PTMs_3.png → Documentation/PTMs_3.png
diff --git a/www/PTMs_4.png → Documentation/PTMs_4.png b/www/PTMs_4.png → Documentation/PTMs_4.png
diff --git a/www/Release Updates.txt → Documentation/Release Updates.txt b/www/Release Updates.txt → Documentation/Release Updates.txt
@@ -25,6 +25,11 @@ Version 0.1.5
 2022-09-07
  - Fixed MetaMorpheus import bug for non LFQ files
 
- Version 0.1.6
- 2022-09-08
-  - Bug fixed for PTM plot not displaying log scale when two samples is selected.
+Version 0.1.6
+2022-09-08
+ - Bug fixed for PTM plot not displaying log scale when two samples is selected.
+
+Version 0.1.7
+2022-11-15
+  - Reorganized Documentation to be in a separate folder to cleanup code
+  - Updated RegEx for N-glycosylation motif to exclude proline as the middle AA
diff --git a/www/annotation_1.png → Documentation/annotation_1.png b/www/annotation_1.png → Documentation/annotation_1.png
diff --git a/www/annotation_2.png → Documentation/annotation_2.png b/www/annotation_2.png → Documentation/annotation_2.png
diff --git a/www/annotation_3.png → Documentation/annotation_3.png b/www/annotation_3.png → Documentation/annotation_3.png
diff --git a/www/basic_1.png → Documentation/basic_1.png b/www/basic_1.png → Documentation/basic_1.png
diff --git a/www/combined_generic_example.png → Documentation/combined_generic_example.png b/www/combined_generic_example.png → Documentation/combined_generic_example.png
diff --git a/www/individual_generic_example.png → Documentation/individual_generic_example.png b/www/individual_generic_example.png → Documentation/individual_generic_example.png
diff --git a/www/multiple_1.png → Documentation/multiple_1.png b/www/multiple_1.png → Documentation/multiple_1.png
diff --git a/www/multiple_2.png → Documentation/multiple_2.png b/www/multiple_2.png → Documentation/multiple_2.png
diff --git a/www/multiple_3.png → Documentation/multiple_3.png b/www/multiple_3.png → Documentation/multiple_3.png
diff --git a/www/plotly_options.png → Documentation/plotly_options.png b/www/plotly_options.png → Documentation/plotly_options.png
diff --git a/www/stacked_plot_1.png → Documentation/stacked_plot_1.png b/www/stacked_plot_1.png → Documentation/stacked_plot_1.png
diff --git a/www/stacked_plot_2.png → Documentation/stacked_plot_2.png b/www/stacked_plot_2.png → Documentation/stacked_plot_2.png
diff --git a/www/two_sample_1.png → Documentation/two_sample_1.png b/www/two_sample_1.png → Documentation/two_sample_1.png
diff --git a/www/two_sample_2.png → Documentation/two_sample_2.png b/www/two_sample_2.png → Documentation/two_sample_2.png
diff --git a/www/two_sample_3.png → Documentation/two_sample_3.png b/www/two_sample_3.png → Documentation/two_sample_3.png
diff --git a/www/unique_1.png → Documentation/unique_1.png b/www/unique_1.png → Documentation/unique_1.png
diff --git a/www/volcano_plot_example.png → Documentation/volcano_plot_example.png b/www/volcano_plot_example.png → Documentation/volcano_plot_example.png
diff --git a/ui.R b/ui.R
@@ -1,8 +1,8 @@
 library(shiny)
 ui <- navbarPage(title = "PrIntMap-R",
                  tabPanel("Documentation",
-                          includeMarkdown("www/Documentation.md"),
-                          "Version 0.1.6"), #update version here for each push
+                          includeMarkdown("Documentation/Documentation.md"),
+                          "Version 0.1.7"), #update version here for each push
                  tabPanel("Run",
                           flowLayout(
                             fileInput(inputId = "database_file", label = "Upload fasta database file",