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Added option to normalize q update by qsat_a. Switched enkf obs to us… #43

Added option to normalize q update by qsat_a. Switched enkf obs to us…

Added option to normalize q update by qsat_a. Switched enkf obs to us… #43

Workflow file for this run

name: Intel Linux Build
on: [push, pull_request, workflow_dispatch]
# Use custom shell with -l so .bash_profile is sourced which loads intel/oneapi/setvars.sh
# without having to do it in manually every step
defaults:
run:
shell: bash -leo pipefail {0}
# Set I_MPI_CC/F90 so Intel MPI wrapper uses icc/ifort instead of gcc/gfortran
env:
cache_key: intel
CC: icc
FC: ifort
CXX: icpc
I_MPI_CC: icc
I_MPI_F90: ifort
# The jobs are split into:
# 1. a dependency build step (setup), and
# 2. a GSI build step (build)
# The setup is run once and the environment is cached,
# so each build of GSI can reuse the cached dependencies to save time (and compute).
jobs:
setup:
runs-on: ubuntu-latest
steps:
# Checkout the GSI to get the ci/spack.yaml file
- name: checkout-gsi
if: steps.cache-env.outputs.cache-hit != 'true'
uses: actions/checkout@v3
with:
path: GSI
# Cache spack, compiler and dependencies
- name: cache-env
id: cache-env
uses: actions/cache@v3
with:
path: |
spack
~/.spack
/opt/intel
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('GSI/ci/spack.yaml') }}
- name: install-intel-compilers
if: steps.cache-env.outputs.cache-hit != 'true'
run: |
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
sudo apt-get update
sudo apt-get install intel-oneapi-dev-utilities intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic
sudo apt-get clean
echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile
# Install dependencies using Spack
- name: install-dependencies-with-spack
if: steps.cache-env.outputs.cache-hit != 'true'
run: |
sudo mv /usr/local/ /usr_local_mv
sudo apt-get install cmake
git clone -c feature.manyFiles=true https://github.com/NOAA-EMC/spack.git
source spack/share/spack/setup-env.sh
spack env create gsi-env GSI/ci/spack.yaml
spack env activate gsi-env
spack compiler find
spack external find
spack add intel-oneapi-mpi
spack concretize
spack install -v --fail-fast --dirty
spack clean -a
build:
needs: setup
runs-on: ubuntu-latest
steps:
- name: checkout-gsi
uses: actions/checkout@v3
with:
path: GSI
- name: install-intel
run: |
echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile
- name: cache-env
id: cache-env
uses: actions/cache@v3
with:
path: |
spack
~/.spack
/opt/intel
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('GSI/ci/spack.yaml') }}
- name: build-gsi
run: |
source spack/share/spack/setup-env.sh
spack env activate gsi-env
cd GSI
mkdir -p build && cd build
cmake -DCMAKE_INSTALL_PREFIX=../install -DGSI_MODE=Regional -DENKF_MODE=GFS -DBUILD_REG_TESTING=OFF ..
make -j2 VERBOSE=1
make install
env:
CC: mpiicc
FC: mpiifort