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Merge #28
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28: Add Pkg to docs, update packages r=charleskawczynski a=charleskawczynski

I'm having some issues with the build in #26, so this just adds `CalibrateEmulateSample.jl` to the docs environment, and updates the packages all around.

Co-authored-by: Charles_Kawczynski <kawczynski.charles@gmail.com>
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@bors @charleskawczynski
bors[bot] and charleskawczynski authored Feb 5, 2020
2 parents 59edfb2 + d3aabb0 commit 0650c7f
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56 changes: 31 additions & 25 deletions Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -137,15 +137,15 @@ version = "0.6.0"

[[ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
git-tree-sha1 = "b9de8dc6106e09c79f3f776c27c62360d30e5eb8"
git-tree-sha1 = "7b62b728a5f3dd6ee3b23910303ccf27e82fad5e"
uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
version = "0.9.1"
version = "0.8.1"

[[Colors]]
deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Printf", "Reexport"]
git-tree-sha1 = "177d8b959d3c103a6d57574c38ee79c81059c31b"
git-tree-sha1 = "f465c8fb261367b2b6b01f9f30357df6bd658460"
uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
version = "0.11.2"
version = "0.10.2"

[[CommonSubexpressions]]
deps = ["Test"]
Expand Down Expand Up @@ -226,9 +226,9 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"

[[DiffEqBase]]
deps = ["ArrayInterface", "ChainRulesCore", "Compat", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LinearAlgebra", "MuladdMacro", "Parameters", "Printf", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TreeViews", "ZygoteRules"]
git-tree-sha1 = "d84f56013dcd658ac725252d24847114c9077f79"
git-tree-sha1 = "8560ec7e0e869a99406380ffb959d15cf7814f97"
uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
version = "6.13.2"
version = "6.13.3"

[[DiffEqCallbacks]]
deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "RecipesBase", "RecursiveArrayTools", "StaticArrays"]
Expand Down Expand Up @@ -302,9 +302,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[Distributions]]
deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
git-tree-sha1 = "71a3f1ae1fca9ed876edfbc2079d7b7c27e2e3d5"
git-tree-sha1 = "e063d0b5d27180b98edacd2b1cb90ecfbc171385"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.22.3"
version = "0.21.12"

[[DocStringExtensions]]
deps = ["LibGit2", "Markdown", "Pkg", "Test"]
Expand Down Expand Up @@ -395,14 +395,14 @@ version = "0.8.4"

[[FiniteDiff]]
deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"]
git-tree-sha1 = "109cca539ac87b1b95538f539ed8eb7e3f35eee5"
git-tree-sha1 = "eb90294af97b564e6036b49296479d7f667763c0"
uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
version = "2.1.0"
version = "2.2.0"

[[FixedPointNumbers]]
git-tree-sha1 = "4aaea64dd0c30ad79037084f8ca2b94348e65eaa"
git-tree-sha1 = "d14a6fa5890ea3a7e5dcab6811114f132fec2b4b"
uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
version = "0.7.1"
version = "0.6.1"

[[ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"]
Expand All @@ -422,9 +422,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"

[[GR]]
deps = ["Base64", "DelimitedFiles", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test"]
git-tree-sha1 = "10633436bc2fc836347bda5073b7b6f06dcdc5e6"
git-tree-sha1 = "c690c2ab22ac9ee323d9966deae61a089362b25c"
uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
version = "0.46.0"
version = "0.44.0"

[[GaussianMixtures]]
deps = ["Clustering", "Compat", "DelimitedFiles", "Distributed", "Distributions", "FileIO", "JLD", "LinearAlgebra", "Logging", "PDMats", "Printf", "Random", "ScikitLearnBase", "SpecialFunctions", "Statistics", "StatsBase"]
Expand Down Expand Up @@ -581,9 +581,9 @@ version = "2019.0.117+2"

[[MacroTools]]
deps = ["DataStructures", "Markdown", "Random"]
git-tree-sha1 = "e2fc7a55bb2224e203bbd8b59f72b91323233458"
git-tree-sha1 = "07ee65e03e28ca88bc9a338a3726ae0c3efaa94b"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.3"
version = "0.5.4"

[[Markdown]]
deps = ["Base64"]
Expand Down Expand Up @@ -620,6 +620,12 @@ git-tree-sha1 = "c69e4a0db8d482a825c7ac76a433759ade2a5af2"
uuid = "f9640e96-87f6-5992-9c3b-0743c6a49ffa"
version = "1.6.0"

[[MultivariateStats]]
deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsBase"]
git-tree-sha1 = "352fae519b447bf52e6de627b89f448bcd469e4e"
uuid = "6f286f6a-111f-5878-ab1e-185364afe411"
version = "0.7.0"

[[NBInclude]]
deps = ["Compat", "JSON", "SoftGlobalScope"]
git-tree-sha1 = "9881dd75c83eba704798dfd7185770c29ac720f8"
Expand Down Expand Up @@ -738,9 +744,9 @@ version = "0.6.2"

[[Plots]]
deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"]
git-tree-sha1 = "11c75a31269c1c64790e7cb910346f64cd4440c1"
git-tree-sha1 = "efbe466a790d7e8a5c4b5ee1601c0c8edc99780b"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "0.27.1"
version = "0.28.4"

[[PoissonRandom]]
deps = ["Random", "Statistics", "Test"]
Expand Down Expand Up @@ -827,9 +833,9 @@ version = "0.7.0"

[[RecursiveArrayTools]]
deps = ["ArrayInterface", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"]
git-tree-sha1 = "275cb9be63cbb8a1e9d5737dac45ecff5840ad48"
git-tree-sha1 = "09db65bcec111b12d1418787aeed7dd876e27707"
uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
version = "2.0.4"
version = "2.0.5"

[[RecursiveFactorization]]
deps = ["LinearAlgebra"]
Expand Down Expand Up @@ -955,10 +961,10 @@ uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
version = "0.9.3"

[[StatsPlots]]
deps = ["Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "Observables", "Plots", "RecipesBase", "Reexport", "StatsBase", "Tables", "Widgets"]
git-tree-sha1 = "9f3f096a310f25debaca9dbe6b4e0df7bb428fd0"
deps = ["Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "MultivariateStats", "Observables", "Plots", "RecipesBase", "Reexport", "StatsBase", "Tables", "Widgets"]
git-tree-sha1 = "e08a7645b9315a523087d5f5b3db7c6c7f8ec96b"
uuid = "f3b207a7-027a-5e70-b257-86293d7955fd"
version = "0.12.0"
version = "0.13.0"

[[SteadyStateDiffEq]]
deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport"]
Expand All @@ -978,9 +984,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"

[[Sundials]]
deps = ["BinaryProvider", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "a4d1e71b4fcfe655e0f96e935d173d1cefeaacc7"
git-tree-sha1 = "d170564815dafe201568a84884d2c9bd52dc4eb6"
uuid = "c3572dad-4567-51f8-b174-8c6c989267f4"
version = "3.8.1"
version = "3.8.2"

[[TableTraits]]
deps = ["IteratorInterfaceExtensions"]
Expand Down
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