Code

fix: Update scheduler script#1372

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ivadym merged 47 commits intodevelopClinical-Genomics/BALSAMIC:developfrom update-scheduler-scriptClinical-Genomics/BALSAMIC:update-scheduler-scriptCopy head branch name to clipboardMay 13, 2024

+843-707

Commits

Commits on Jan 22, 2024

• Update scheduler script

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• Order imports

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Commits on Jan 23, 2024

• Update Snakemake CLI calls

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Commits on Jan 24, 2024

• Typo

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• Remove QSUB

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• Add script and scheduler pydantic model

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Commits on Jan 25, 2024

• Add scheduler model & script

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• Remove scheduler tests :P

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• Remove unused tests

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• Update conftest model

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• Order alphabetically cluster submit command

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• Update conftest

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• change order pytests

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Commits on Jan 26, 2024

• Update pytests

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• Update script typehints

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• Update snakemake model

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• Update scheduler models & validators

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• pytests

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• Update scheduler model pytest

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• Update immediate submit script

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• Update fixtures

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• Create fixtures improve pytests

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• CHANGELOG

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• Changelog links

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• Fix time flag

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Commits on Jan 31, 2024

• Mail type pytest

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• Test catch Value Error jobid extraction

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• test_submit_job_error

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• Update BALSAMIC/commands/run/analysis.py

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• Empty options pytest

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• Just some pytest fixing thing

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• Remove unused var

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• Improve pytest

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Commits on Feb 1, 2024

• Merge develop

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• Add mail type from cluster.json

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• Fix slurm job id

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• remove f-string

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• Print to stdout

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Commits on Apr 25, 2024

• Merge develop

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• Black

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• old version of black :(

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Commits on May 8, 2024

• Increase sleep before start

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Commits on May 13, 2024

• Update BALSAMIC/models/scheduler.py

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• Update CHANGELOG.rst

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• Fix CHANGELOG

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• Format changelog

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• Fix changelog format

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