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fix: Increase vardict tumor only cores allocation to 18 #1495

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Oct 23, 2024
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fix: Increase vardict tumor only cores allocation to 18 #1495

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9427341
increase vardict cores to 18
khurrammaqbool Oct 23, 2024
b407b3e
changelog
khurrammaqbool Oct 23, 2024
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2 changes: 1 addition & 1 deletion BALSAMIC/constants/cluster_analysis.json
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Expand Up @@ -206,7 +206,7 @@
},
"vardict_tumor_only": {
"time": "10:00:00",
"n": 9
"n": 18
},
"sentieon_TNscope": {
"time": "24:00:00",
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3 changes: 2 additions & 1 deletion CHANGELOG.rst
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Expand Up @@ -37,7 +37,7 @@ Changed:
* Fixed TNscope research VCF filters to either PASS or triallelic site https://github.com/Clinical-Genomics/BALSAMIC/pull/1475
* Increased maximal amount of redirects for lychee test following links in docs to 10 https://github.com/Clinical-Genomics/BALSAMIC/pull/1488
* Updated readthedocs tools versions https://github.com/Clinical-Genomics/BALSAMIC/pull/1489
* Renamed UMI consensusfiltered bamfile to be picked up by multiqc https://github.com/Clinical-Genomics/BALSAMIC/pull/1490
5* Renamed UMI consensusfiltered bamfile to be picked up by multiqc https://github.com/Clinical-Genomics/BALSAMIC/pull/1490


Removed:
Expand All @@ -59,6 +59,7 @@ Fixed:
* MSIsensor-pro container and updated msisensor to version 1.3.0 https://github.com/Clinical-Genomics/BALSAMIC/pull/1486
* Somalier container and updated somalier to version 0.2.19 https://github.com/Clinical-Genomics/BALSAMIC/pull/1487
* Vardict memory and tmpdir allocation https://github.com/Clinical-Genomics/BALSAMIC/pull/1492
* Vardict tumor only allocates dynamic number of cores https://github.com/Clinical-Genomics/BALSAMIC/pull/1495

[15.0.1]
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