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30 Open 153 Closed
30 Open 153 Closed
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Issues list

Switch to toml based install - uv perhaps?
#268 opened Dec 10, 2024 by dnil
No need for alembic update in the PR template
#264 opened Dec 4, 2024 by dnil
Python 3.8 EOL (October 2024)
#263 opened Dec 4, 2024 by northwestwitch
customized coverage report give back "0/0 " transcipt for a gene present in the panel
#260 opened Aug 28, 2024 by 4WGH
16
Fix query to avoid "GROUP BY clause; this is incompatible with sql_mode=only_full_group_by" error
#236 opened Oct 13, 2021 by northwestwitch
Time to update transcripts
#225 opened Feb 11, 2021 by 47KW
9
removing samples from db enhancement
#214 opened Mar 3, 2020 by ninanorgren
2
granularity question
#209 opened Jan 28, 2020 by parlar
3
Add MT transcripts to database enhancement
#205 opened Feb 8, 2019 by moonso
3 tasks
Add support for bed formated exon definitions enhancement
#204 opened Feb 8, 2019 by moonso
Chanjo failed to link ccds.15.grch37p13.extended.bed
#200 opened Aug 31, 2018 by biocyberman
Report possible XXY for sex-check
#195 opened Oct 31, 2017 by robinandeer
calculate gene / interval is missing
#190 opened May 29, 2017 by mjlarsen
2
chanjo generates errors instead of help text
#187 opened Apr 24, 2017 by henrikstranneheim
6
Depth for PCR based amplicons(overlap)
#186 opened Apr 23, 2017 by tiehan
Chanjo sex: report ambiguous result
#183 opened Jun 10, 2016 by robinandeer
Wrong strand info in the ccds.15.grch37p13.extended.bed?
#180 opened Apr 7, 2016 by biocyberman
3
joined gene names, a possible pitfall to cause incorrect result?
#178 opened Mar 13, 2016 by biocyberman
2
Use GTF/GFF instead of CCDS bed?
#175 opened Mar 1, 2016 by biocyberman
2
Chanjo-sexcheck - filters on mapping quality?
#173 opened Feb 5, 2016 by henrikstranneheim
Chanjo-sexcheck - does it handle PAR?
#172 opened Feb 5, 2016 by henrikstranneheim
Update bootstrap to select between GRCh37/38
#166 opened Dec 23, 2015 by robinandeer
3
Store expected sex of sample
#164 opened Nov 10, 2015 by robinandeer
2
Do not append to log file for new process
#159 opened Nov 2, 2015 by henrikstranneheim
Capture sambamba output and pipe to logfile
#157 opened Oct 26, 2015 by robinandeer
@moonso
4
ProTip! Exclude everything labeled bug with -label:bug.