Use IGV.js 2.15.8 - fix default ClinVar track color #3958
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Codecov ReportPatch and project coverage have no change.
Additional details and impacted files@@ Coverage Diff @@
## main #3958 +/- ##
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Coverage 84.85% 84.85%
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Files 303 303
Lines 17834 17834
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Hits 15133 15133
Misses 2701 2701 ☔ View full report in Codecov by Sentry. |
northwestwitch
approved these changes
May 30, 2023
| @@ -1,5 +1,5 @@ | |||
| {% macro igv_script() %} | |||
| <link rel="shortcut icon" href="//igv.org/web/img/favicon.ico"> | |||
| <!-- IGV JS--> | |||
| <script src="https://cdn.jsdelivr.net/npm/igv@2.15.6/dist/igv.min.js"></script> | |||
| <script src="https://cdn.jsdelivr.net/npm/igv@2.15.8/dist/igv.min.js"></script> | |||
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This PR adds a functionality or fixes a bug.
Fix #3949. Track color now as per the bigbed by default, thanks to the IGV.js team!
Testing on cg-vm1 server (Clinical Genomics Stockholm)
Prepare for testing
scout-stageand the server iscg-vm1.ssh <USER.NAME>@cg-vm1.scilifelab.sesudo -iu hiseq.clinicalssh localhostpodman pssystemctl --user stop scout.targetsystemctl --user start scout@<this_branch>systemctl --user status scout.targetscout-stage) to be used for testing by other users.Testing on hasta server (Clinical Genomics Stockholm)
Prepare for testing
ssh <USER.NAME>@hasta.scilifelab.seus; paxa -u <user> -s hasta -r scout-stage. You can also use the WSGI Pax app available at https://pax.scilifelab.se/.conda activate S_scout; pip freeze | grep scout-browserbash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_scout -t scout -b <this_branch>us; scout --versionpaxaprocedure, which will release the allocated resource (scout-stage) to be used for testing by other users.How to test:
Expected outcome:
The functionality should be working
Take a screenshot and attach or copy/paste the output.
Review: