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@CoBrALab

Computational Brain Anatomy Laboratory

Computational Brain Anatomy Laboratory, located in the CIC at the Douglas Institute, McGill University

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  1. MAGeTbrain MAGeTbrain Public

    Multiple Automatically Generated Templates brain segmentation algorithm

    Python 48 25

  2. atlases atlases Public

    Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space

    Python 30 18

  3. antsRegistration-MAGeT antsRegistration-MAGeT Public

    A reimplementation of MAGeTbrain using only ANTs tools.

    Shell 16 6

  4. minc-bpipe-library minc-bpipe-library Public

    Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines

    Shell 13 8

  5. MINC-VM MINC-VM Public

    Packer built VMs with minc-toolkit and friends

    Shell 7 3

Repositories

Showing 10 of 41 repositories
  • ODC-Mouse-Forms Public

    A repo containing OpenDataCapture forms for tracking mouse data gathered from experiments within the CoBra Lab

    CoBrALab/ODC-Mouse-Forms’s past year of commit activity
    TypeScript 1 1 6 0 Updated Feb 12, 2025
  • MAGeTBrain-nextflow Public
    CoBrALab/MAGeTBrain-nextflow’s past year of commit activity
    Nextflow 0 0 0 0 Updated Feb 11, 2025
  • RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/

    CoBrALab/RABIES’s past year of commit activity
    Python 38 15 55 4 Updated Feb 5, 2025
  • CPCA Public

    Complementary principal component analysis (CPCA) for fMRI confound correction.

    CoBrALab/CPCA’s past year of commit activity
    0 0 0 0 Updated Feb 5, 2025
  • optimized_antsMultivariateTemplateConstruction Public

    A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

    CoBrALab/optimized_antsMultivariateTemplateConstruction’s past year of commit activity
    Shell 23 8 32 0 Updated Jan 31, 2025
  • make_slice_images Public
    CoBrALab/make_slice_images’s past year of commit activity
    Shell 1 0 1 0 Updated Jan 22, 2025
  • twolevel_ants_dbm Public

    A twolevel deformation based morphometry pipeline using ants

    CoBrALab/twolevel_ants_dbm’s past year of commit activity
    Python 10 8 19 1 Updated Aug 12, 2024
  • minc-toolkit-extras Public

    Extra miscellaneous scripts for minc-toolkit

    CoBrALab/minc-toolkit-extras’s past year of commit activity
    Shell 6 7 8 0 Updated Jul 29, 2024
  • minc-bpipe-library Public

    Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines

    CoBrALab/minc-bpipe-library’s past year of commit activity
    Shell 13 8 10 1 Updated Jun 21, 2024
  • MAGeTbrain Public

    Multiple Automatically Generated Templates brain segmentation algorithm

    CoBrALab/MAGeTbrain’s past year of commit activity
    Python 48 25 12 0 Updated Jun 18, 2024
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