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Move computation #208

Merged
merged 11 commits into from
Mar 24, 2020
Merged

Move computation #208

merged 11 commits into from
Mar 24, 2020

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jlubken
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@jlubken jlubken commented Mar 23, 2020

Move all computation into models.py SimSirModel.

Most properties of Parameters have moved to the SimSirModel.

Replace vectors with raw df from sim_sir_df.

Use column names from sim_sir_df.

Use column names from dispositions dictionary in a way that allows dispositions to be extended beyond 'hospitalized', 'icu', 'ventilated' in model.

Closes #195 Closes #108

@jlubken jlubken requested a review from quinn-dougherty March 23, 2020 21:09
@jlubken jlubken self-assigned this Mar 23, 2020
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closes #108 ?

@jlubken
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jlubken commented Mar 23, 2020

Yes except for the dispositions dict. Close 108 if you want.

@jlubken jlubken requested a review from cjbayesian March 23, 2020 21:13
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tested locally and read all the code -- all good from my end

@mariekers
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does this fix #211 ?

@quinn-dougherty
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does this fix #211 ?

no

@quinn-dougherty quinn-dougherty added this to the Release: v1.0 milestone Mar 24, 2020
@mdbecker mdbecker merged commit 0c0115e into develop Mar 24, 2020
@mdbecker mdbecker deleted the move_computation branch March 24, 2020 18:11
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Fix incorrect vectors and cli Replace use of multiple vectors with dataframes
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