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CU-2n9g91d: Add back news, demo etc.
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tomolopolis committed Mar 30, 2022
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Expand Up @@ -9,6 +9,28 @@ MedCAT can be used to extract information from Electronic Health Records (EHRs)

Official Docs [here](https://medcat.readthedocs.io/en/latest/)

## News
- **New Downloader \[15. March 2022\]**: You can now [download](https://uts.nlm.nih.gov/uts/login?service=https://medcat.rosalind.kcl.ac.uk/auth-callback) the latest SNOMED-CT and UMLS model packs via UMLS user authentication.
- **New Feature and Tutorial \[7. December 2021\]**: [Exploring Electronic Health Records with MedCAT and Neo4j](https://towardsdatascience.com/exploring-electronic-health-records-with-medcat-and-neo4j-f376c03d8eef)
- **New Minor Release \[20. October 2021\]** Introducing model packs, new faster multiprocessing for large datasets (100M+ documents) and improved MetaCAT.
- **New Release \[1. August 2021\]**: Upgraded MedCAT to use spaCy v3, new scispaCy models have to be downloaded - all old CDBs (compatble with MedCAT v1) will work without any changes.
- **New Feature and Tutorial \[8. July 2021\]**: [Integrating 🤗 Transformers with MedCAT for biomedical NER+L](https://towardsdatascience.com/integrating-transformers-with-medcat-for-biomedical-ner-l-8869c76762a)
- **General \[1. April 2021\]**: MedCAT is upgraded to v1, unforunately this introduces breaking changes with older models (MedCAT v0.4),
as well as potential problems with all code that used the MedCAT package. MedCAT v0.4 is available on the legacy
branch and will still be supported until 1. July 2021
(with respect to potential bug fixes), after it will still be available but not updated anymore.
- **Paper**: [What’s in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarization](https://www.aclweb.org/anthology/2021.naacl-main.382.pdf)
- ([more...](https://github.com/CogStack/MedCAT/blob/master/media/news.md))

## Demo
A demo application is available at [MedCAT](https://medcat.rosalind.kcl.ac.uk). This was trained on MIMIC-III and all of SNOMED-CT.

## Tutorials
A guide on how to use MedCAT is available at [MedCAT Tutorials](https://github.com/CogStack/MedCATtutorials). Read more about MedCAT on [Towards Data Science](https://towardsdatascience.com/medcat-introduction-analyzing-electronic-health-records-e1c420afa13a).

## Available Models
Available models [here](https://medcat.readthedocs.io/en/latest/main.html#models)

## Acknowledgements
Entity extraction was trained on [MedMentions](https://github.com/chanzuckerberg/MedMentions) In total it has ~ 35K entites from UMLS

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